| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3397 |
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| Symbol | glpD |
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| ID | 7970635 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3576828 |
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| End bp | 3578501 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793981 |
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| Product | glycerol-3-phosphate dehydrogenase |
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| Protein accession | YP_002945280 |
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| Protein GI | 239816370 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0578] Glycerol-3-phosphate dehydrogenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.505029 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGAC GCGAAAATAC AATGGCGCCC TTCCGTGACC AAAGTCATGA ACCAACGGGC
CCATCTTCTG TGAGCGATTT CTCCTCCAAT CCGCCTTCGC CGGCAACCGA TTGCGACGTG
CTGATCGTCG GCGGCGGCAT CAACGGCTGC GGCATTGCGC GCGACCTGGC CGGCCGGGGC
TGGCGCGTGG TGCTGTGCGA GAAGGACGAT CTCGCCTCGC ACACCTCGTC GTCCTCCACC
AAGTTGATCC ACGGCGGCCT GCGCTACCTG GAGTACTACG AGTTCTCGCT CGTGCGCAAG
GCGCTGCAGG AGCGCGAAGT GCTGCTCAAG AGCGCGCCGC ACATCATGTG GCCGCTGCGC
TTCGTGATGC CGCACGACCC GTCGATGCGG CCGGCCTGGA TGATCCGCAT CGGCCTCTTC
CTGTACGACC ATCTCGCCAA ACGCGAAGTG CTGCCGGGCT CGCGCAGCAT CGACCTGCGC
AGCCATGCGG CCGGCGCGCC GCTCAAGCCG CAGTTCAAGC GCGGCTTCGT CTATTCCGAC
GGCTGGGTCG ACGATGCGCG GCTCGTGGTG CTCAACGCCG TCGATGCCAG GGCCCGCGGC
GCCGAGGTGC TCACGCGCAC CCGCTGCGTG CATGCGCAGC GCGACGCCGA CGGCTGGACC
GCCACGCTCG AGGCCGCGGA CGGCGGCGTG CGCACGGTGC GTGCGCGCGC CGTGGTCAAT
GCCGCGGGGC CGTGGGCGGA ATCGTTCCTG CGCGGCGTGG CGCAGTCGGC CAAGGGCGAG
CCGCTGGCCA CGCGGCACCT GCGGCTGGTC AAGGGCAGCC ACATCGTGGT GCCGCGCCTG
TTCGAACACG ACCACGCCTA CATCTTCCAG AACCCCGACA AGCGGATCAT CTTCGCGATT
CCCTACCAGG ACGAGTTCAC GCTGATCGGC ACCACCGACA TCGAGCTGAA CGGCGACGAT
CCCGGCGCCG CGCGCATCGC CGAGGAAGAG ATCGCCTACC TCTGCATGCA GGCAAGCCGC
TATTTCGACA AGCCCGTGAA GCCGGCCGAC GTGGTCTGGA CCTATTCGGG CGTGCGCCCG
CTGCTCGACG ATGCGTCGGG CGACCCCTCG GCCGTCACGC GCGACTACAT GCTCGAGTCG
AACACCACCG CGGCACCGCT GCTGTCGGTC TGGGGCGGCA AGATCACCAC CTTCCGCAAG
CTGGCCGAGG ACGCGGCCGA CGAGGTCGGC AAGATGCTCG GCCAGTCGAG CGCGCAGCGT
CCGCCCTGGA CCGATGGCGC CTTCCTGGCC GGCGGCGATC TTTCCGCATG GATCGGCGCC
GCCACGCGGC CCGACGACGA TTTCGAACGC TTCGTGGCCG CGGTGCAGGC GCGCCATGCA
TGGCTGGACG CCAAGCTCGC GCGTCGCCTG GCACGTGCCT ACGGCGCGCG CGTGGCCGAG
CTGCTCGGCG ACGCCAAGTC CATGGAAGAC ATGGGCGAAG CCGTGGCACC CGGCCTCCAC
GAGCGCGAGC TGCGCTTCCT GCAAGAGAAC GAGTGGGCCG TGAGCGCCGA CGACGTGCTC
TGGCGCCGGT CGAAGCTCGG CCTGCGCTAC ACGGCCGAAG AGCGCCGGCA GGTGGCCGCC
TGGCTGCAGG CACGCACCAC CAACAACAGC TACATGATCA ACGGGGAGCG CTGA
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| Protein sequence | MKRRENTMAP FRDQSHEPTG PSSVSDFSSN PPSPATDCDV LIVGGGINGC GIARDLAGRG
WRVVLCEKDD LASHTSSSST KLIHGGLRYL EYYEFSLVRK ALQEREVLLK SAPHIMWPLR
FVMPHDPSMR PAWMIRIGLF LYDHLAKREV LPGSRSIDLR SHAAGAPLKP QFKRGFVYSD
GWVDDARLVV LNAVDARARG AEVLTRTRCV HAQRDADGWT ATLEAADGGV RTVRARAVVN
AAGPWAESFL RGVAQSAKGE PLATRHLRLV KGSHIVVPRL FEHDHAYIFQ NPDKRIIFAI
PYQDEFTLIG TTDIELNGDD PGAARIAEEE IAYLCMQASR YFDKPVKPAD VVWTYSGVRP
LLDDASGDPS AVTRDYMLES NTTAAPLLSV WGGKITTFRK LAEDAADEVG KMLGQSSAQR
PPWTDGAFLA GGDLSAWIGA ATRPDDDFER FVAAVQARHA WLDAKLARRL ARAYGARVAE
LLGDAKSMED MGEAVAPGLH ERELRFLQEN EWAVSADDVL WRRSKLGLRY TAEERRQVAA
WLQARTTNNS YMINGER
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