Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3395 |
Symbol | |
ID | 7970633 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3574683 |
End bp | 3575753 |
Gene Length | 1071 bp |
Protein Length | 356 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644793979 |
Product | ABC transporter related |
Protein accession | YP_002945278 |
Protein GI | 239816368 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3839] ABC-type sugar transport systems, ATPase components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.471192 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACGCA TCGATCTCGA CCTGGCCCAC GCCTACCGCC CCAACCCGAA GCAGGACAGC GACTATGCGC TGCTGCCGCT CAAGATGAGC TTCCGCGATG GTGGCGCGTA CGCCTTGCTC GGCCCCTCGG GCTGCGGCAA GACGACCATG CTCAATATCA TCTCGGGCCT GCTGGTGCCG TCGCAGGGCA CGGTGACCTT CGATGGCCGC GACATGACGC GCGCCACGCC GCAGGAACGC AACATCGCGC AGGTGTTCCA GTTTCCGGTG ATCTACGACA CCATGACCGT GGCCGAGAAC CTCGCGTTTC CGCTGCGCAA CCGCAAGGTG CCCGAAGACC AGATCAGGAA GCGCGTGGGC GAGATTGCCG AAATGCTCGA CATGAGCGGG CAGCTGAACC AGCGCGCCTC GGGCCTCGCG GCCGATGCCA AGCAGAAGAT CTCGCTCGGC CGCGGCCTGG TGCGCAGCGA CGTCTCGGCG GTGCTGTTCG ACGAGCCGCT GACGGTGATC GATCCGCACC TCAAGTGGCA GCTGCGCCGC AAGCTCAAGC AGATCCACCG CGAGCTCAAG CTCACGCTGA TCTACGTGAC GCACGACCAG GTCGAGGCGC TCACCTTCGC CGAAGAGGTG GTGGTGATGA CGCGCGGCAA GGCCGTGCAG GTGGGCAGCG CCGAGGCGCT GTTCGAGCGG CCGGCGCATA CCTTCGTCGG CCACTTCATC GGCTCGCCGG GCATGAACTT TCTTTCGGCG AAGAGCGCGA ACGGCGCGCT CGAGGTGGCG GGCACGCCGC TCGTGCCGAC GCGCGAACTG CCGCAGGGCG CGCTCAAGAT CGGCATCCGG CCCGAGTACC TGCGCCTGTC GAACGCGGGC GCCGCCGGCG CCGTGCCGGC CGTGGTGAAG CAGGTGCAGG ACGTCGGCAC GCACGCCATG CTGAGCGCCG AGGTCGACGG CGGCGTGGTC AAGGTGCGCC TGCACTCGGA CGACCAGCCG CCGGCCGTGG GCGACACCGT GTGGCTGCGG GTGCTCGACA CCCACACCTG CTTCTACAAG GACGAGGAGC TGGTCGCATG A
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Protein sequence | MARIDLDLAH AYRPNPKQDS DYALLPLKMS FRDGGAYALL GPSGCGKTTM LNIISGLLVP SQGTVTFDGR DMTRATPQER NIAQVFQFPV IYDTMTVAEN LAFPLRNRKV PEDQIRKRVG EIAEMLDMSG QLNQRASGLA ADAKQKISLG RGLVRSDVSA VLFDEPLTVI DPHLKWQLRR KLKQIHRELK LTLIYVTHDQ VEALTFAEEV VVMTRGKAVQ VGSAEALFER PAHTFVGHFI GSPGMNFLSA KSANGALEVA GTPLVPTREL PQGALKIGIR PEYLRLSNAG AAGAVPAVVK QVQDVGTHAM LSAEVDGGVV KVRLHSDDQP PAVGDTVWLR VLDTHTCFYK DEELVA
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