| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3376 |
|---|
| Symbol | |
|---|
| ID | 7970614 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3555744 |
|---|
| End bp | 3556697 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644793960 |
|---|
| Product | Histone deacetylase |
|---|
| Protein accession | YP_002945259 |
|---|
| Protein GI | 239816349 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.104662 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAGA CCGGCTACTT CACACATCGC GATTGCTGGA AGCACGACAT GGGCCGGGGC
CACCCCGAAT GTCCCGAACG GCTCGACGCC ATCGAGGACA GGCTGCTGCT CACCGGCGTG
GGCGATGCCC TCGAACACCG CGACGTGCCG CTGGCCACCC TGGCCCAGAT CACCCGCGCA
CACAGCGAGG CGCATCTCGA ACACCTCGAA TCGCTGCACC AGCGCCTGGT GGCAGACGAG
CCGGCGGGCG GCCCCCGCCA TGCGCAGCTC GACCCCGACA CCATTCTGAA CCGCTTCACC
CTGCTGGCCG CGCGCCGCGC CGCGGGCGCC GCCATTGCCG CCACCGACGC GGTGATGGCG
GGCGAGGTCG ACAACGCGTT CTGCTCGGTG CGCCCGCCCG GGCACCACGC CTGCTACGAA
CAGGCCATGG GCTTCTGCTT CCTCAACAAC GTGGCCATTG CGGCGCGGCA TGCGCTCGAG
GTGCACGGGC TGGAGCGCGT GGCCATCGTC GATTTCGACG TGCACCATGG CAACGGCACC
GAGAACATCC TGTCGAACGA TCCGCGCGTG CTGATGGTGG GCTTCTTCCA GCATCCGTTC
TATCCGTACA GCGGCACCGA GCACCCGGCC TCCAACATGC TCAACCTGCC GATCCCGGCC
TACACCAGGG GCATGGACGT GCGCGAGCTG ATCGAGGCCG CCTGGATGCC CCGGCTCGAG
GAATTCGCGC CCGAGATGAT CTTCGTGAGC GCGGGCTTCG ACGCCCACCG CGAGGACGAC
CTGGGCCAGC TCGGCCTCAC CGAGAACGAC TTCGCCTGGA TCACCGGCCG CGTGCGGGAC
GTCGCGCGGC GCCATGCGCA GGGCCGCATC GTCTCGATGC TCGAAGGGGG CTACAACCTG
GACGCCCTCG CGCGCAGCGT CGAAGCCCAT ATCCGCGTCC TTGCCGATCT GTAG
|
|---|
| Protein sequence | MGKTGYFTHR DCWKHDMGRG HPECPERLDA IEDRLLLTGV GDALEHRDVP LATLAQITRA
HSEAHLEHLE SLHQRLVADE PAGGPRHAQL DPDTILNRFT LLAARRAAGA AIAATDAVMA
GEVDNAFCSV RPPGHHACYE QAMGFCFLNN VAIAARHALE VHGLERVAIV DFDVHHGNGT
ENILSNDPRV LMVGFFQHPF YPYSGTEHPA SNMLNLPIPA YTRGMDVREL IEAAWMPRLE
EFAPEMIFVS AGFDAHREDD LGQLGLTEND FAWITGRVRD VARRHAQGRI VSMLEGGYNL
DALARSVEAH IRVLADL
|
|---|
| |