Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3372 |
Symbol | |
ID | 7970610 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3550724 |
End bp | 3552514 |
Gene Length | 1791 bp |
Protein Length | 596 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644793956 |
Product | acyl-CoA dehydrogenase domain protein |
Protein accession | YP_002945255 |
Protein GI | 239816345 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.272289 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCTACA CCGCCCCCCT CAAGGACATG CTGTTCGACA TCGAGCACCT GGCCAACATC GGCGAGATCG CCAGGCTGCC GGGCTTCGAG GACGCCGGCC TCGAAACCGC GCAGGCCGTG CTCGAGGAAT GCGCGCGCTT CAACCAGGAC GTGGTCGCGC CGCTGAACAT CGAGGGCGAC CGCAACCCCT CGTCCTTCAA GGACGGCCAG GTCGCGACCA CGCCGGGCTT CAAGGAAGCC TTCGCGCAGT ACGTGTCGGG CGGCTGGCAG GGCCTGCAGC ATCCGGCGGA CTTCGGCGGC CAGGGCCTGC CCAAGACCAT CGGCGCGGCC TGCGGCGAAA TGCTCAACTC GGCCAACATG AGCTTCGCGC TGTGCCCGCT CTTGAGCGAC GGCGCCATCG AGGCGCTGCT CACGGCCGGC TCCGACGAGC TCAAGGCGGT GTACCTCGAA AAGCTCGTGA GCGGCCAGTG GACCGGCACC ATGAACCTCA CCGAGCCGCA GGCCGGCAGC GACCTTGCGC TGGTGCGCAG CCGCGCCGAA CCGCAGCCCG ACGGCACCTA CAAGGTCTTC GGCACCAAGA TCTTCATCAC CTACGGCGAG CACGACATGG CCGAGAACAT CGTGCACCTG GTGCTCGCAC GCGTGACCGG CGCGCCCGAA GGCGTGAAGG GCATCAGCCT GTTCGTGGTG CCCAAGTTCC TCGTCGGCAA GGACGGGTCG CTGGGTGCGC GCAACGACGT GCACTGCGTG AGCATCGAGC ACAAGATGGG CATCAAGGCC TCGCCCACCG CCGTGCTGCA GTACGGCGAC CATGGCGGTG CCGTGGGTTA TCTCGTCGGC CAGGAGAACC GCGGCCTCGA GTACATGTTC ATCATGATGA ACTCGGCCCG CTATGCCGTG GGCATGCAGG GCATCGCGAT TGCCGAGCGC GCCTACCAGC ACGCCGTGGC CTACGCCAAG GACCGCGTGC AGAGCCGCCC GGTCGATGGT TCGATGAACG CGAGCGCGCC CATCATCCAC CACCCCGACG TCAAGCGCAT GCTGATGACG ATGCGCGCCT ACACCGAAGG CTGCCGCGCC ATGGCCTCGG TGGCCGCGGC CGCGTACGAC GCCGCGCACC ACCACCCCGA TGCCGAGGCG CGCAAGCAGA ACCAGGCCTT CTACGAATTC ATGGTGCCGC TCGTGAAGGG CTACAGCACC GAGATGAGCC TGGAAGTGAC CTCGCTGGGC GTGCAGGTGC ATGGCGGCAT GGGCTTCATC GAGGAGACCG GTGCGGCGCA GTACTACCGC GACGCCAAGA TCCTCACGAT CTACGAGGGC ACCACCGCCA TCCAGGCCAA CGACCTCGTG GGCCGCAAGA CCGCGCGCGA CGGCGGCCAG ACCGCCAAGG CCATTGCCGC GCAGATCGAG AAGACCGAAG CCGAGCTGTC CAAGAGCGGC AGCCCCGCCG CGGCCGCCGT CCTCAAGCGC CTGAAGCCTG CGCGCGAAGC CTTCATCGAA GTGGTCGACT TCGTCGCGGG CCAGACCAAG GCGTCGCCCA ACGCGGTGTT CGCGGGCAGC GTGCCCTACC TGATGCTCGC GGGCAACCTC GTGGCCGGCT GGCAGCTGGC GCGCTCGCTG ATCATTGCAG CGGACCTGGC GTCGCGCAGT GTCGACGTGG ACTTCATGCA GGCCAAGATC GCGACCGCGC GCTTCTATGC CGAGCACATC CTGAACAGGG TGCCCGGGCT GCGCGACAGC ATCGTCGATG GCGCCGAGAG CGTCACGGCA CTGGCGCTCG ACGCCTTCTG A
|
Protein sequence | MSYTAPLKDM LFDIEHLANI GEIARLPGFE DAGLETAQAV LEECARFNQD VVAPLNIEGD RNPSSFKDGQ VATTPGFKEA FAQYVSGGWQ GLQHPADFGG QGLPKTIGAA CGEMLNSANM SFALCPLLSD GAIEALLTAG SDELKAVYLE KLVSGQWTGT MNLTEPQAGS DLALVRSRAE PQPDGTYKVF GTKIFITYGE HDMAENIVHL VLARVTGAPE GVKGISLFVV PKFLVGKDGS LGARNDVHCV SIEHKMGIKA SPTAVLQYGD HGGAVGYLVG QENRGLEYMF IMMNSARYAV GMQGIAIAER AYQHAVAYAK DRVQSRPVDG SMNASAPIIH HPDVKRMLMT MRAYTEGCRA MASVAAAAYD AAHHHPDAEA RKQNQAFYEF MVPLVKGYST EMSLEVTSLG VQVHGGMGFI EETGAAQYYR DAKILTIYEG TTAIQANDLV GRKTARDGGQ TAKAIAAQIE KTEAELSKSG SPAAAAVLKR LKPAREAFIE VVDFVAGQTK ASPNAVFAGS VPYLMLAGNL VAGWQLARSL IIAADLASRS VDVDFMQAKI ATARFYAEHI LNRVPGLRDS IVDGAESVTA LALDAF
|
| |