| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3371 |
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| Symbol | |
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| ID | 7970609 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3549680 |
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| End bp | 3550642 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793955 |
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| Product | 2-nitropropane dioxygenase NPD |
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| Protein accession | YP_002945254 |
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| Protein GI | 239816344 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.448974 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCAAGC TGCCCCCCGT GCTCGCGAAC CTGCCGCTGC CGATCATCGG CTCGCCGCTG
TTCATCATCA GCAACCCCAA GCTCGTGATC GCGCAATGCA AGGCCGGCGT GGTCGGCTCG
ATGCCGGCGC TCAACGCGCG CCCCGCGGCG CAGCTCGAAG ACTGGCTGGC CGAGATCACC
GAGGAGCTCG CGGCCTACAA CAAGGCCAAC CCCGACAAGC CCGCCGCGCC CTTTGCCATC
AACCAGATCG TGCACAAGAG CAACGACCGG CTCGAGCACG ACATGGAGAT GGTCGTGAAG
TACAAGGTGC CGATCGTCAT CACCTCGCTG GGCGCGCGCA CCGACGTGAA CGATGCGGTG
CACAGCTACG GCGGCGTCAC GCTGCACGAC ATCATCAACA ACAAGTTCGC GCAGAAGGCG
ATCGAGAAGG GCGCCGACGG CATCATTGCC GTGGCGGCCG GGGCTGGCGG CCATGCGGGC
GTGAAGAGCC CGTTCGCGCT GGTGCAGGAA ATCCGCCAGT GGTTCGACGG CCCCATCGCG
CTGTCGGGCT CCATCGCCAC CGGCGGCGCG GTGCTCGCGG CGCAGGCCAT GGGCGCCGAC
TTCGCCTACA TCGGCACCGC CTTCATCGCC ACCGAGGAGG CGCGCGCGAG CGAGGAATAC
AAGCAGGCGA TCGTCGACGG CAACTCGGAC GACATCGTCT ACTCCAGCCT CTTCACCGGC
GTGCACGGCA ACTATCTTGC GCCGAGCATC GTCAAGGCCG GCATGGACCC GGCCAACCTG
CCCGAAGGCG ACGTCAAGAC CATGAACTTC GGCGGCGGCG AGGGCAGCAA GGCCAAGGCC
TGGAAGGACA TCTGGGGCTC GGGCCAGGGC ATCGGCGCCG TCACCGAAGT GGCCAGCGCC
GCGGCCTTCA TCGAGAAGCT CAAGCGCGAG TACCAGCAAG CCAGGCAGCG GCTCGCCCTT
TGA
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| Protein sequence | MSKLPPVLAN LPLPIIGSPL FIISNPKLVI AQCKAGVVGS MPALNARPAA QLEDWLAEIT
EELAAYNKAN PDKPAAPFAI NQIVHKSNDR LEHDMEMVVK YKVPIVITSL GARTDVNDAV
HSYGGVTLHD IINNKFAQKA IEKGADGIIA VAAGAGGHAG VKSPFALVQE IRQWFDGPIA
LSGSIATGGA VLAAQAMGAD FAYIGTAFIA TEEARASEEY KQAIVDGNSD DIVYSSLFTG
VHGNYLAPSI VKAGMDPANL PEGDVKTMNF GGGEGSKAKA WKDIWGSGQG IGAVTEVASA
AAFIEKLKRE YQQARQRLAL
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