| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3368 |
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| Symbol | |
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| ID | 7970606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3544946 |
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| End bp | 3546652 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 644793952 |
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| Product | ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC |
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| Protein accession | YP_002945251 |
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| Protein GI | 239816341 |
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| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4987] ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components |
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| TIGRFAM ID | [TIGR02868] thiol reductant ABC exporter, CydC subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAGTT CCCAGGGTGG CTGGCGCGAC CTCCGGCTGG TGCTGCGGCC GTTCCTGGCG
GCGCAGCCCC GCGCGCTGCT GTGGGGCGGC GTGCTGGCGG CGGCCACCGT GCTGGCGGGC
ATGGCCTTGC TCGGCCTGTC GGGCTGGTTC ATCACCGCGA CGGCACTCGC GGGCCTGCAT
GCGGCCACGG CCTTCACCTT CGACGTGTTC ATGCCCTCGG CCGGCATCCG GCTGTTGGCG
CTCGGGCGCA CCGCATCGCG CTACGGCGAG CGCCTGGTCA CGCACGACGC AAGCTTCGGC
GTGCTCGCGG CCTTGCGCGT GCGCCTGTTC CGCGGCTGGG CGCGCCCCGG CGCGGCGCTC
CAGCTGGCGA TGCGGCCATC GCGGCTCCTG TTCCGGCTGA CTTCCGACAT CGATGCGCTG
GAGTCGCTCT ACCTGCGGCT GCTCGTGCCC GCCGCCGCGG CGCTGGGCGC GGCGCTGCTC
GCGGGCGTGG TGCTCGGGTT CATGCACGCC GGCGTGGGGC TCGCGCTGCT GCTGTGGCTG
GTGGCCGCCG GCTGGGGTCT GGCGCTGTTC ATCGCGCGGC GCGCCCGGCG TCCGGCGGTG
CGCCGCGCGC ATGGCATCGA GGCGCTGCGG GCGCGCACCG TCGACCTCGT CGCGGGCCAG
ACCGACCTGG TGATGGCGGG GCGTGCCGAT GCGCAGCGCG AAGCACTGAT GAATGCCGAT
GCGCGCCTGG CCAAGGCCGA CCTCGCGCTG AACAGGCTCG AGACTTCGGC CGGCGCGGCC
TACAACGTGG CCGGCACGCT GACACTGGTG GGCGTGCTGC TGGCGGTGGG TGTGCTCGTG
GGCGAGGGCG CCATCGGCGC GCCTGCCGCG GCGCTCGGGC TGCTCGTGGC GCTGACGGCC
ACGGAGCCGT TCGCGGCCCT GCGGCGCGGC GCGCTCGATG CCGGCCGCAC CTGGCTCGCG
GTCGGGCGCC TCGCGCCGCG CCTGGCGCCT GACGAAGCGC GACCGGGTGT CGCCGTCGTT
GAACCCGGCG CGGCTTGGGC GGTGAGTCTG GCCCACCTGA GTGCGGCGCA CTTCGGCAGC
GGCATTCCCG CGCTGAACGA TGTCTCGCTG GCCATCGCGC CGGGCGAACG CGTGGCGCTC
GTCGGCGCGA GCGGTGCGGG CAAGTCGACA TTGCTCGCGG TGATTGCCGG AGAAGTAGCG
CCGCTGGCCG GCAGCGTCAA CGCTGAGCCG GCCTGCCTCC TGACCCAGCG CACCGAACTT
TTCCAGGACA GCCTGCGAGA CAACCTCCGG CTCGCCGATC CCGCCGCGGA CGACGTCCGC
CTGTGGAACG CATTGCAATC GGCCGGTCTC GCCAGTGACG TGCACTCCTT CCCCGCCGGA
CTCGATACCG CGCTGGGCGA AGGCGGCCTG GGCCTTTCGG GCGGGCAGTC GCGCCGGCTC
GCGCTCGCGC GGTTGCTGCT GCGCCCGGTG CCGCTCTGGC TGCTCGACGA GCCCACCGAG
GCGCTGGATG CCGCCATCGC ACATGACGTG CTGCAGCGCC TGTACGCAGA GGCCGGCCCG
CGCACGCTGC TGATCGCCAC GCACCTGCGG CGCGAGGCCG CGCTGGCCGA CCGCCTGGTG
TGCATGCGCC AGGGCCGCAT CGTTGCCGAA CTGCGGCGCG GCAGCCCCGC CTTCGACGCC
GCGCTCGACG CGCTGCGGCC CGACTGA
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| Protein sequence | MSSSQGGWRD LRLVLRPFLA AQPRALLWGG VLAAATVLAG MALLGLSGWF ITATALAGLH
AATAFTFDVF MPSAGIRLLA LGRTASRYGE RLVTHDASFG VLAALRVRLF RGWARPGAAL
QLAMRPSRLL FRLTSDIDAL ESLYLRLLVP AAAALGAALL AGVVLGFMHA GVGLALLLWL
VAAGWGLALF IARRARRPAV RRAHGIEALR ARTVDLVAGQ TDLVMAGRAD AQREALMNAD
ARLAKADLAL NRLETSAGAA YNVAGTLTLV GVLLAVGVLV GEGAIGAPAA ALGLLVALTA
TEPFAALRRG ALDAGRTWLA VGRLAPRLAP DEARPGVAVV EPGAAWAVSL AHLSAAHFGS
GIPALNDVSL AIAPGERVAL VGASGAGKST LLAVIAGEVA PLAGSVNAEP ACLLTQRTEL
FQDSLRDNLR LADPAADDVR LWNALQSAGL ASDVHSFPAG LDTALGEGGL GLSGGQSRRL
ALARLLLRPV PLWLLDEPTE ALDAAIAHDV LQRLYAEAGP RTLLIATHLR REAALADRLV
CMRQGRIVAE LRRGSPAFDA ALDALRPD
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