| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3347 |
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| Symbol | |
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| ID | 7970585 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3526474 |
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| End bp | 3527505 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793932 |
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| Product | ABC transporter related |
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| Protein accession | YP_002945231 |
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| Protein GI | 239816321 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3839] ABC-type sugar transport systems, ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.127285 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGGTC TGGAATTGAG CAACGTCGCC AAGCGGTTCG GCGATGTCAC GGTCGTGCAG
CAGCTCGACC TTGCGGTGCA TGAAGGCGAG TTCGTCGTGC TGCTGGGCGA GTCGGGCTGC
GGCAAGAGCA CCACGCTGCG CATGGTGGCG GGCCTGGAGA GCGTGAGCGA AGGGCAGATT
CGTATCGGTG GGCGAGACGT GACCGCACTG CCTCCGATGT CGCGCGACAT CGCGATGGTG
TTCCAGAACT ATGCGCTGTA CCCGCACATG GACGTGGCGC AGAACATGAG CTTTGCGCTC
AGCCTCGCAG GCCGGCCCGC AGCGGAGATC CGCGCCAAGG TGGCGGTCGC GGCCAAGGTG
TTGAACATCG AACACCTGCT CAACCGCCGG CCGAAGGAGC TGTCGGGTGG GCAGCGCCAG
CGCGTGGCCA TCGGCCGCGC CATCGTGCGC GAGCCCAAGG TGTTCCTGTT CGACGAGCCG
TTGTCGAACC TCGATGCCAA GCTGCGCGGC CACATGCGCG CCGAGTTGGC ACTGCTGCAC
GAGCGCCTGG CCAAGACCAC CGTGTATGTC ACGCACGACC AGGTGGAGGC GATGACGCTG
GCCGACCGGA TCGTCATCTT CGACAAGGGG CGCATCCAGC AGGTCGGCAC GCCGGCGGAG
GTTTTCAACC GGCCGGCGAC GCTGTTCGTC GCGGCATTCA TCGGCATGCC GGGCATGAAC
CTGCTGCCGG TGCGCTTCGC CGACCGGCCA GCGGGCCACG GCACGTTGTG CGGCGAAGGC
TTCGAGCTGC CCGCGCCCGC CTGGCTGCGT GAAAGAGTGA GCTCGGCGGA CCAGGCGCTC
ACGCTCGGCA TCCGACCGCA GGCCCTGCAC GTGGCCAACG GCGCACCGCT GAACGTCAAG
GTCGACATCG TCGAGTACCT CGGCACCGAG AGCCAGGTCG TCGGTCACCT GGCATCGCCG
GGTGGCGCGC GCATTACAGC CACGGTGCAG GGCGATGCGC ATGGACTGCT GCACGGCCCC
CGCTGGGGCT GA
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| Protein sequence | MAGLELSNVA KRFGDVTVVQ QLDLAVHEGE FVVLLGESGC GKSTTLRMVA GLESVSEGQI
RIGGRDVTAL PPMSRDIAMV FQNYALYPHM DVAQNMSFAL SLAGRPAAEI RAKVAVAAKV
LNIEHLLNRR PKELSGGQRQ RVAIGRAIVR EPKVFLFDEP LSNLDAKLRG HMRAELALLH
ERLAKTTVYV THDQVEAMTL ADRIVIFDKG RIQQVGTPAE VFNRPATLFV AAFIGMPGMN
LLPVRFADRP AGHGTLCGEG FELPAPAWLR ERVSSADQAL TLGIRPQALH VANGAPLNVK
VDIVEYLGTE SQVVGHLASP GGARITATVQ GDAHGLLHGP RWG
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