| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3330 |
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| Symbol | |
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| ID | 7970568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3509851 |
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| End bp | 3510645 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793915 |
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| Product | transcriptional regulator, IclR family |
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| Protein accession | YP_002945214 |
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| Protein GI | 239816304 |
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| COG category | [K] Transcription |
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| COG ID | [COG1414] Transcriptional regulator |
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| TIGRFAM ID | [TIGR02431] beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACCG ATGCCACCGA TCTTTCCCCC GCGCCCGCCG GCCTCGACAA GCGCGACTGG
ATCGCCGGGC TGGAACGCGG CGTGAGCATC ATCGAAGCCT TCGACGACGC CCATCCGCGC
CTCACCGCCA GCCAGGCCGG CGAACGCACC GGCATGACGC GCACGGCCGC GCGGCGCTAC
CTGCTGACCC TGCAGCACAT GGGCTACGTG GCGAGCGACG GCAAATTGTT CTGGCTCACG
CCGCGCGTGC TGCGGCTTGG GCAGTCGTAC CTCGACTCGG CCCGGCTGCC GCGCATCGTC
CAGCCCTTCC TGCAGCGCGT GGCCGCCGGC ACCAGCGAGA TCGCCTACCT CAGCGTGATG
GACGGCGACG AGGTGGTCTA CATCGCGCGC AACGGACCCA ACCGCAGCAT GAGCACCGGC
TACGTGCTGG GCGCGCGGGT GCCGGCGCAG GTCACGGCCG CGGGCATGCT GATGCTCGCG
CTGCGCAGCG ACGCCGAGCT GGCCGGCTGG CTCGCCACGC GGCAGCTGCA GGTGTTCACC
TCGCACACCA TCGCGAGCAT GGAGCGCATG AAGCTGGAGC TCGCGCGCAT CCGGGCACAG
GGCTGGGCGC TGTCGGAGCA GCAGCTGGAC CTCAATTCGC GCGGCATCGC GGTGCCGCTG
CGCGACCGCC ACGGCACGCT GGTGGGCGCG CTCAACATCA CCATGCCGAT GGGCCACGAA
AGCTCCGAGG ACGCGGTGGC GCGCGTGCTG CCGGTCCTGC GTGAAACCGC GCAGGCCATG
CGCAACCTGA TCTGA
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| Protein sequence | MSTDATDLSP APAGLDKRDW IAGLERGVSI IEAFDDAHPR LTASQAGERT GMTRTAARRY
LLTLQHMGYV ASDGKLFWLT PRVLRLGQSY LDSARLPRIV QPFLQRVAAG TSEIAYLSVM
DGDEVVYIAR NGPNRSMSTG YVLGARVPAQ VTAAGMLMLA LRSDAELAGW LATRQLQVFT
SHTIASMERM KLELARIRAQ GWALSEQQLD LNSRGIAVPL RDRHGTLVGA LNITMPMGHE
SSEDAVARVL PVLRETAQAM RNLI
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