| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3327 |
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| Symbol | |
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| ID | 7970565 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3506847 |
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| End bp | 3508127 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793912 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_002945211 |
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| Protein GI | 239816301 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGTAT TCATCTTCCT CGGCTCGCTG CTCGCCGCCA TGGCGCTGGG CATTCCAATT
GCCTATTCGC TGCTGCTTTC GGGCGTGGCA CTGATGGTCC ACCTCGACCT GTTCGATGCG
CAGATCCTCG CGCAGAACGT GGTGAACGGC GCCGACAGCT TTCCGCTGCT TGCCGTGCCG
TTCTTCATGC TGGCCGGCGA GATCATGAAC GTCGGCGGCC TTTCCAAGCG CATCGTCCAC
CTGGCGCTGA CGCTCGTCGG CCATCGCCGC GGCGGGCTCG GCTTCGTCGC CATCCTGGCG
GCCTGCCTGC TGGCCGCGCT GTCGGGCTCG GCGGTGGCGG ACACAGCCGC GCTCGCGGCG
CTGCTGCTGC CGATGATGGT GCGCGCGGGC CATGACAAGG CGCGCGCCGG GGGGCTCATC
GCTTCGGCCG GCATCATCGC GCCGGTCATC CCGCCCTCGA TCGGCTTCGT GATCTTCGGC
GTGGCCGCCA ACGTGTCGAT CAGCAAGCTG TTCCTGGCCG GCATCGTGCC CGGCATCATG
CTGGGGGCGG GCATCGCCAT CGCGTGGTGG TGGGTTGCCA AGCGCGAGAA CGTCCAGCCT
GCGCCCAAGG CCACCGGCGC CGAGCGCGCG AAGGCCTTCA AGGAGTCGCT CTGGGCGCTG
TTCCTGCCGG TGATCGTGCT GGTCGGCCTC AAGATGGGCG TGTTCACGCC CACCGAGGCG
GCCGTGGTCG CGGCGGTCTA CGCGCTGTTC GTTGCGATGG TGGTCTACCG CGAGATGAAC
TTCGCGCAGC TCTACCGGGT CTTCGTGAGC GCGGCCAAGA CCACGGCCGT GATCATGTTC
CTGGTGGCGG CGGCCATGGT TTCGGCCTGG CTCATCACGG TGGCCGACCT GCCGAGCAAG
CTCATCAGCC TGCTGGAGCC CTTCATGGGC AACCAGACCC TGTTGCTGAT CGCGATCATG
GTGCTCGTGA TGGCGGTCGG CACGGCCATG GACATGACGC CGACCATCCT GATCCTCACG
CCTGTCCTGA TGCCGGTGGT CAAGGCCGCG GGCATCGACC CGGTGTACTT CGGCGTGCTG
TTCATCATCA ACAACGCCAT CGGGCTGATC ACGCCGCCGG TGGGCACGGT GCTCAACGTG
GTGGCGGGCG TCGGCAAGAT GAAGATGGAC GAGGTGACGC GCGGCGTGCT GCCGTTCATG
ACGGCGCAGT TCATCGTGAT GTTCCTGCTC GTATTTTTCC CCTCGCTGGT GATGGTGCCC
ATGCGCTGGT TCGCCGGCTG A
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| Protein sequence | MTVFIFLGSL LAAMALGIPI AYSLLLSGVA LMVHLDLFDA QILAQNVVNG ADSFPLLAVP
FFMLAGEIMN VGGLSKRIVH LALTLVGHRR GGLGFVAILA ACLLAALSGS AVADTAALAA
LLLPMMVRAG HDKARAGGLI ASAGIIAPVI PPSIGFVIFG VAANVSISKL FLAGIVPGIM
LGAGIAIAWW WVAKRENVQP APKATGAERA KAFKESLWAL FLPVIVLVGL KMGVFTPTEA
AVVAAVYALF VAMVVYREMN FAQLYRVFVS AAKTTAVIMF LVAAAMVSAW LITVADLPSK
LISLLEPFMG NQTLLLIAIM VLVMAVGTAM DMTPTILILT PVLMPVVKAA GIDPVYFGVL
FIINNAIGLI TPPVGTVLNV VAGVGKMKMD EVTRGVLPFM TAQFIVMFLL VFFPSLVMVP
MRWFAG
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