| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3325 |
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| Symbol | |
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| ID | 7970563 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3504936 |
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| End bp | 3505769 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793910 |
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| Product | Shikimate dehydrogenase substrate binding domain protein |
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| Protein accession | YP_002945209 |
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| Protein GI | 239816299 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTTCCG GCAAGACCAC CCTCGTCGCG CACCTGGGCT TTCCCACCGA AAGCTTCAAG
GCGCCGATGA TCTACAACCC CTGGTTCGAG AAGCAGGGCA TCGACGCCGT CGTGGTGCCG
ATGGGCGTGA AGCCCGAGGA CTATCCGGCA ACCTTCGCCG CGCTGTTCCG GCTCACCAAC
ATCCGCGGTG CGCTGGTGAC CATGCCGCAC AAGATCACGA CCATGGGCCT GGTCGACGAA
GTCACGCCAA CGGCAAAGAT CGCCGGCGCC TGCAACGCGG TGCTCAAGCG CGCCGACGGC
ACGCTGGTGG GCGACCAGTT CGATGGCGCC GGCTTCGTGC GCGGCGTGCT GCGCAAGGGC
TGCGTGCTCG AGGGCGCGCG CGTGCTGGTC TCCGGCAGCG GCGGCGTGGG CTCGGCAATT
GCCGCTTCGC TGGCCGCGGC CGGCGTGGCG GAAATCGCGC TCTTCGATGC CTACGCGGCT
TCGGCCGAAG CGCTGGCCGG GCGGCTGCGC ACGCACTACC CGGCGCTGGC CGTGTCCACC
GGCTCGAACG ATCCGGCCGG CTTCGACCTC GTCGTCAATG CCACGCCGCT GGGCATGAAG
GAGGGCGATC CGCTGCCCTT CGACGTGGAC CGCATCGCGG CCTCGACCTT CGTCGGCGAA
GTGGTCATGA AGTCCGAATA CACGCCGCTG CTGCGTGCCG TCCGCGACAA GGGCTGCGCC
GTGCAGGTGG GCACCGACAT GCTGTTCGAG ATGATTCCCG CGTACCTCGA GTTCTTCGGC
TTCGGCACCG CCACGGCCGA TGCGCTGCGC GCCGAGGCGA AGATCAGCTA CTGA
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| Protein sequence | MISGKTTLVA HLGFPTESFK APMIYNPWFE KQGIDAVVVP MGVKPEDYPA TFAALFRLTN
IRGALVTMPH KITTMGLVDE VTPTAKIAGA CNAVLKRADG TLVGDQFDGA GFVRGVLRKG
CVLEGARVLV SGSGGVGSAI AASLAAAGVA EIALFDAYAA SAEALAGRLR THYPALAVST
GSNDPAGFDL VVNATPLGMK EGDPLPFDVD RIAASTFVGE VVMKSEYTPL LRAVRDKGCA
VQVGTDMLFE MIPAYLEFFG FGTATADALR AEAKISY
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