Gene Vapar_3323 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3323 
Symbol 
ID7970561 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3503200 
End bp3503628 
Gene Length429 bp 
Protein Length142 aa 
Translation table11 
GC content67% 
IMG OID644793908 
ProductCarboxymuconolactone decarboxylase 
Protein accessionYP_002945207 
Protein GI239816297 
COG category[S] Function unknown 
COG ID[COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 
TIGRFAM ID[TIGR02425] 4-carboxymuconolactone decarboxylase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGACG AAGCAAGCAC CCCACCTTCC AACGACTACG AAGCCGGCCT CGTCAACCGC 
CGCCGCGTGC TCGGCGACGC CTGGGTCGAC AAGTCGCTCG CCAACCGCAA CGCGTTCAAC
GCCGAATTCC AGGAGCTCAT CACCCGCCAT GCCTGGAACG ACATCTGGGG CCGGCCCGCG
CTCGGCGACA AGACGCGCCG CTACATGGTG CTGTCGATGA TGCTGGGCAT CCACGCCTAT
GAAGAATTCG CGATGCACGT GCGCGCCGCG CTCGACGGCC CGCCCGAATC GCGCCTCACG
CCCGAGGACA TCAAGGAAGT CATCATGATG GCGGCCATCT ACTGCGGCGT GCCGGTGGCG
AACCACGCCT TCGGCATTGC GGCCGGCATC TTGCGCGAGA AGGGCTTGCT GGCCGCGGCC
GCCCAGTGA
 
Protein sequence
MTDEASTPPS NDYEAGLVNR RRVLGDAWVD KSLANRNAFN AEFQELITRH AWNDIWGRPA 
LGDKTRRYMV LSMMLGIHAY EEFAMHVRAA LDGPPESRLT PEDIKEVIMM AAIYCGVPVA
NHAFGIAAGI LREKGLLAAA AQ