Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3323 |
Symbol | |
ID | 7970561 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3503200 |
End bp | 3503628 |
Gene Length | 429 bp |
Protein Length | 142 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644793908 |
Product | Carboxymuconolactone decarboxylase |
Protein accession | YP_002945207 |
Protein GI | 239816297 |
COG category | [S] Function unknown |
COG ID | [COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit |
TIGRFAM ID | [TIGR02425] 4-carboxymuconolactone decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGACG AAGCAAGCAC CCCACCTTCC AACGACTACG AAGCCGGCCT CGTCAACCGC CGCCGCGTGC TCGGCGACGC CTGGGTCGAC AAGTCGCTCG CCAACCGCAA CGCGTTCAAC GCCGAATTCC AGGAGCTCAT CACCCGCCAT GCCTGGAACG ACATCTGGGG CCGGCCCGCG CTCGGCGACA AGACGCGCCG CTACATGGTG CTGTCGATGA TGCTGGGCAT CCACGCCTAT GAAGAATTCG CGATGCACGT GCGCGCCGCG CTCGACGGCC CGCCCGAATC GCGCCTCACG CCCGAGGACA TCAAGGAAGT CATCATGATG GCGGCCATCT ACTGCGGCGT GCCGGTGGCG AACCACGCCT TCGGCATTGC GGCCGGCATC TTGCGCGAGA AGGGCTTGCT GGCCGCGGCC GCCCAGTGA
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Protein sequence | MTDEASTPPS NDYEAGLVNR RRVLGDAWVD KSLANRNAFN AEFQELITRH AWNDIWGRPA LGDKTRRYMV LSMMLGIHAY EEFAMHVRAA LDGPPESRLT PEDIKEVIMM AAIYCGVPVA NHAFGIAAGI LREKGLLAAA AQ
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