| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3316 |
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| Symbol | |
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| ID | 7973712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3494825 |
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| End bp | 3496426 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793901 |
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| Product | Protein of unknown function DUF1800 |
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| Protein accession | YP_002945200 |
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| Protein GI | 239816290 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5267] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCGGCCG CCGCTTCGCC GTGGTTGTTG TTCTCCCCGC GCCGCGTGCC GAGGGCGCTG
GGCGCATGCG CGCTGGCCCT GCTCGCGGCC TGCGCGGGCG CGCCGGGGAA CCATCGGCCG
CTGGTGTCGG TGTCCCTGCC TTCTGCACCC ATGAACGAAG CCGCGCGGCT GCGCTGGCTC
GACCGCGTGG GCTGGGGTGC CAATGCGAGC AGCGAGGCGC AGCTGGCGCG GCGCGGCCTG
CCGCTGTGGA TGCGCGACCA GCTCAATCCG CGGCCCGCGC CGCTGCCGCC GGCCGCGCAG
GCGCAGATCG ATGCCATGGC CGTTTCGCGC ACGCCGCTCG ACCAGCTCGT CACCGGACTC
GACGCGCAGC GCAAGGCCGC CGACGCGCTG CCCGACGAAG ACCAGAAGAA GGCCGCGCGC
CAGGCCTACC AGCGGCAGCT CAACGAGCTG GCGCGCGAGG CGCAGCAGCG CTTCGTGCTG
CGCGCTCTCT ATTCGCCCAA CCAACTGCAG GAGCAGATGA CGTGGTTCTG GATGAACCAC
TTCAACGTCA ACCTGCGCAA GGACAACATC CGCGCGATGG TGGGCGACTA CGAAGAGAAC
GCCATCCGCC CGCATGCGCT CGGCAGCTTC CGCGACTTGC TCGGCGCCAC GCTGCACCAC
CCCGCGATGC TGCGCTACCT CGACAACGCG CAGAACGCCG CCAACCGCAT CAACGAGAAC
TACGCGCGCG AGCTGATGGA GCTGCACACG ATGGGCGTGG GCGGCGGCTA TTCGCAAGCC
GACGTGCAGG AGCTGGCGCG CGTGCTCACC GGCGTGGGCG TGAGCTACCA GCCGCTCGAT
GCGCCGCCGC CCAACGTGCG GCCGGCCCTG CGCGCCGACT ATGTGCGCCG GGGCCTGTTC
GAGTTCAACC CCAACCGGCA CGACTACGGG CCGAAGACGC TGCTGGGCCA GCCGATCCAG
AGCCGCGGGT TGGCCGAGGC CGACGAGGCG CTCGACCGCC TGGCGCGCGC GCCGGCCACC
GCGCGCTTCA TCTCGCGCAA GCTCGCCGTG TACTTCGTCT CCGACGATCC GCCGCAGGCC
TTGGTCGAAC GCATGGCGGC GGCCTTCACG CGCAGCGACG GCGACATCGC CCTCACGCTC
AAGGCGATGT TCGAGTCGCC CGAATTCGCC GCCTCGCTCG GGCGCAAGTT CCGCGACCCG
GTGCACTACG TGATCGCCGG CGTGCGGCTC GCGTACGACG ACCGCGTGGT GACGAACGTG
GGCCCGCTGC TCGGCTGGAT CAACCGCATG GGCGAGCCGC TGTACGGCCA CGAGACGCCC
GACGGCTATC CGCTCAACGA AGCCGCCTGG GCCAGCGCGG GGCAGATGAA CACGCGCTTC
GAGATCGCGC GCGCCATCGG TGCGAATGGC GCCGTGCTGT TCCGCACGGA CGACAAGGCG
CCGCTGGAGA AACCCGCATT CCCGCCACTG GCCGATTCGC ACGCGGTGCG CGCCATGCAG
GCGGGGCTGG GCGCGGACAC GCGCGAGGCG CTGGCGCAGG CGAGGAACCC GCAGGAGTGG
AACACCTTTC TGCTGGCGTC GCCGGAACTG ATGCGCCGCT GA
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| Protein sequence | MAAAASPWLL FSPRRVPRAL GACALALLAA CAGAPGNHRP LVSVSLPSAP MNEAARLRWL
DRVGWGANAS SEAQLARRGL PLWMRDQLNP RPAPLPPAAQ AQIDAMAVSR TPLDQLVTGL
DAQRKAADAL PDEDQKKAAR QAYQRQLNEL AREAQQRFVL RALYSPNQLQ EQMTWFWMNH
FNVNLRKDNI RAMVGDYEEN AIRPHALGSF RDLLGATLHH PAMLRYLDNA QNAANRINEN
YARELMELHT MGVGGGYSQA DVQELARVLT GVGVSYQPLD APPPNVRPAL RADYVRRGLF
EFNPNRHDYG PKTLLGQPIQ SRGLAEADEA LDRLARAPAT ARFISRKLAV YFVSDDPPQA
LVERMAAAFT RSDGDIALTL KAMFESPEFA ASLGRKFRDP VHYVIAGVRL AYDDRVVTNV
GPLLGWINRM GEPLYGHETP DGYPLNEAAW ASAGQMNTRF EIARAIGANG AVLFRTDDKA
PLEKPAFPPL ADSHAVRAMQ AGLGADTREA LAQARNPQEW NTFLLASPEL MRR
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