| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3305 |
|---|
| Symbol | |
|---|
| ID | 7973701 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3483320 |
|---|
| End bp | 3484378 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644793890 |
|---|
| Product | 2-nitropropane dioxygenase NPD |
|---|
| Protein accession | YP_002945189 |
|---|
| Protein GI | 239816279 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.830845 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACTC CCTTGCAGCA ACTCCTCGGC ACCGATCTGC CGCTGATCCA GGCACCCATG
GCGGGCGTGC AGGGCAGCGC CATGGCCATT GCGGTCAGCA ACGCCGGCGG CCTCGGCTCG
CTGCCCTGCG CCATGCTGGG CCCCGACACC ATGCGCAGCG AGCTCGCCGC AATCCGGGCC
GGCACCGGCA AGCCCTTCAA CGTCAACTTC TTCTGCCACA CGCCGCCGGA GCCGAGCGCC
GAGCGCGAGG CGGCATGGCG CAGCGCGCTG GCACCGTACT ACACCGAGTT CGGCATCGAT
GCTGCGAGCA TCCCCACCGG CCCCGGGCGC AACCCGTTCA GTGCCGACGT GGCCACTGTG
CTGGCAGAGT TCCGCCCGGA GGTGGTGAGC TTTCATTTCG GGCTGCCTTC GGAGGCGCTG
ATGGCGCAGG TGCACGGCTG GGGTGCGAAG GTGCTGGCCT CGGCCACCAC GGTCGAGGAG
GCGCGGTGGC TCGAAGCGCG TGGCGTGGAT GCGGTCATCG CGCAAGGGCT GGAGGCCGGC
GGGCATCGCG GCCATTTCCT GTCGCACGAC CTGACGAGGC AGCTCGGCAC CTTTGCGCTG
CTGCCGCAGC TGGTGCATGC CGTGAAGGTG CCGGTGATCG CGGCCGGCGG CATTGCCGAT
GCAGCAGGCG TGGCCGCGGC CATGGCGCTG GGCGCTGCGG GCGTGCAGGT CGGCACCGCC
TATCTGCTGG CGCCGGAGGC GACCACCAGC GCCGTGCACC GCGCGGCGCT CAAGAGCCAG
GCCGCGCGCC ACACGGCGCT GACCAATCTC TTCACGGGCC GCCCCGCGCG CGGCATCGTG
AACCGCGTGA TGCGCGAGCT GGGGCCGATC GGTGCGGCGG CGCCCGAGTT TCCGCTGGCC
ACCTCGGGCA TTGCGCCCTT GCGCGCCAAG GCCGAGGCGC AGGGCAGCGG CGATTTTTCT
CCGCTGTGGT CGGGGCAGAA TGCCACCGGC TGCCGCGAGC TGCCGGCCGC CGAGATCACG
CGCGCCTTGG CGCAAGGTTT TCAATCTCTT ACGGCCTGA
|
|---|
| Protein sequence | MTTPLQQLLG TDLPLIQAPM AGVQGSAMAI AVSNAGGLGS LPCAMLGPDT MRSELAAIRA
GTGKPFNVNF FCHTPPEPSA EREAAWRSAL APYYTEFGID AASIPTGPGR NPFSADVATV
LAEFRPEVVS FHFGLPSEAL MAQVHGWGAK VLASATTVEE ARWLEARGVD AVIAQGLEAG
GHRGHFLSHD LTRQLGTFAL LPQLVHAVKV PVIAAGGIAD AAGVAAAMAL GAAGVQVGTA
YLLAPEATTS AVHRAALKSQ AARHTALTNL FTGRPARGIV NRVMRELGPI GAAAPEFPLA
TSGIAPLRAK AEAQGSGDFS PLWSGQNATG CRELPAAEIT RALAQGFQSL TA
|
|---|
| |