| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3297 |
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| Symbol | |
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| ID | 7973693 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3474382 |
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| End bp | 3475659 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644793882 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_002945181 |
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| Protein GI | 239816271 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0515873 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCCCG TGATGGTTGC AACGATGGTG CTGTGTTTTG CACTGTCGGT TTCTGTTGCA
GTGTCCATCG GGCTCGCCTC GATCCTGGGC ATCCAGGTGG CCAATGCCAA CATGCTGATC
TCCGTCAAGG AGATGTTCAA TTCGATCAAC AAGTTTCCGC TGGCGGCCAT TCCGTTCTTC
ATCCTGGCCG GCAACCTGAT GGAAACGGGC GGCATCTCGC GGCGGCTGGT CGAGTTTGCC
AAGAGCATCG TGGGCGGCGT GCAGGGCGGC CTGCCGATGA CCTGCGTGCT CACCTGCATG
ATCTTTGCGG CGGTGTCGGG CTCGTCGGTG GCCACCACCT TCGCCATTGG CGCGATCCTG
ATTCCGGCGC TCATCAAGCA CGGCTACCCC ACCGCCTACG CGGCCGCGCT GCAGGCCACC
AGCGCCGAGC TCGGCGTGAT CATCCCGCCC TCGATCCCGA TGATCCTGTA CGGCGTGAGC
GCCGAGGTGT CGATCGGCGA GCTGTTCATC GCGGGCTTCG GCCCCGGCAT TCTCATCAGC
CTGGCGCTCA TGCTGTTCGT CTGGGCCTTC TGCAAGTGGA AGGGCTGGGG CAAAAACGAC
GGCGACGGCC GCATGCCGTT TGGCAAGGCG CTGTGGCAGG CCGGCTGGGC GCTGCTGATG
CCCGTCATCA TCCTGGGCGG CATCTACGGC GGCATCTTCA CGCCGACCGA AGCCTCGGCC
GTGGCGGTGT TCTATGCGCT GGTGGTGGGC GTGGTGATCT ACCGCGAGAT CAAGCCCAAG
GACCTGTACG TGATCCTGCG CAAGTCGGTG CTGTCGTCGG CGGTGATCAT GTTCATCATC
GCCAACGCGG GCCTGTTCGC GTTCCTGATC ACGCGCGCGG GGGTGCCCGA CGCCATCGGC
CACTGGCTGC AGGAAGTGCT GAAGTCGCCC GCGATGTTCC TTCTGGGCGT GAACGCGGCG
CTGTTCATCA TCGGCATGTT CATCGAGACC AGCGCGGCCA TCATCGTGCT CGCGCCCATC
CTTGCGCCGG TGGCGGTGCA CTTCGGCATC GACCCGGTGC ACTTCGGGCT CATCATGGTG
GTGAACCTCG CCCTGGGCAT GATCACCCCG CCCTTCGGCG TGAACCTGTT CGCGGCCTGC
ACGGTGGCGC GCATCTCGCT GGACCGGATC GTGAAGTACC TGGTGCCCTT CGTGCTCGTG
ATCCTGGCCT GCCTGCTGGT GATCACCTAC GTGCCGTGGA TATCGCTGGC GCTGCGCGAC
CTGGTGTATG CCAAGTAG
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| Protein sequence | MTPVMVATMV LCFALSVSVA VSIGLASILG IQVANANMLI SVKEMFNSIN KFPLAAIPFF
ILAGNLMETG GISRRLVEFA KSIVGGVQGG LPMTCVLTCM IFAAVSGSSV ATTFAIGAIL
IPALIKHGYP TAYAAALQAT SAELGVIIPP SIPMILYGVS AEVSIGELFI AGFGPGILIS
LALMLFVWAF CKWKGWGKND GDGRMPFGKA LWQAGWALLM PVIILGGIYG GIFTPTEASA
VAVFYALVVG VVIYREIKPK DLYVILRKSV LSSAVIMFII ANAGLFAFLI TRAGVPDAIG
HWLQEVLKSP AMFLLGVNAA LFIIGMFIET SAAIIVLAPI LAPVAVHFGI DPVHFGLIMV
VNLALGMITP PFGVNLFAAC TVARISLDRI VKYLVPFVLV ILACLLVITY VPWISLALRD
LVYAK
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