| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3295 |
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| Symbol | |
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| ID | 7973691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3472923 |
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| End bp | 3473894 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644793880 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_002945179 |
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| Protein GI | 239816269 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.245111 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTGA CCCGACTGGC CGCCGGCCTG GTTCTGGGCA TGGGCATGGC CTGCGCGGCC
TTTGCGCAGA CGACCATGAA GATCAGCATC TCGACCGCGC AGAACTCGCA CCAGGGCGTG
GCCATCGACA CCTTCGCCAA GGAAGTCGAA AAGCGCACGG GCGGCCGCTA CAAGGTCCAG
ACCTTCTACA ACGGCTCGCT CGGCGGCGAG CGCGAATCGA TCGAGGCGGT GCAGCTGGGC
ACGCAGGAGC TGGCTTTCTC CTCGACCGGC CCGGTGCCCA ACTTCGTGCC CGAAACCAAG
ATCCTCGACG TGCCCTTCCT GTTCCGCGAC AAGGCCCATG CGCGCGCCGT GCTCGACGGC
CCGATCGGCC AGGACCTGCT CACCAAGTTC GACGCCAAGG GCTTCAAGGC GCTGGCCTGG
GCCGAGAACG GCTTCCGCCA CATGACCAAC AGCAAGCGCG ACGTGAAGGC GCCCGAGGAC
CTCAAGGGCC TGAAGATGCG CACCATGGAG AACCCGGTGC ACATCGCCGC CTACAAGGGC
TTCGGCATCA TCACCACGCC CATGGCCTTC CCCGAAGTGT TCACCGCGCT CCAGCAGGGC
ACGGTCGACG GCCAGGAGAA CCCGCTGCCG GTGATCATCT CCGCCAAGTT CGACCAGGTG
CAAAAGCACC TTTCGCTCAC GGGCCACGTC TATTCGCCCT GCATCTTCCT GATGAACAAG
GCCTCGTTCG ACAAGCTCAG CGCGGCCGAC AAGCAGGCCT TCCTGGACGC CGCCAAGGAA
GGCACCAAGG CCAACCGCGC CCGCGTGGAC GAGGACGACG CCAAGGGCGT GGCCGACCTG
CGCGCCAAGG GCATGACCGT GATCGAGAAC GTCGACAAGG CCAAGTTCGT GGCCGCGCTC
GCACCGGTGA ATGCGCAGTT CGAGAAGGAC TTCGGCAAGG CCAACCTCGA CAAGATCCGC
GACTACAAGT GA
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| Protein sequence | MKLTRLAAGL VLGMGMACAA FAQTTMKISI STAQNSHQGV AIDTFAKEVE KRTGGRYKVQ
TFYNGSLGGE RESIEAVQLG TQELAFSSTG PVPNFVPETK ILDVPFLFRD KAHARAVLDG
PIGQDLLTKF DAKGFKALAW AENGFRHMTN SKRDVKAPED LKGLKMRTME NPVHIAAYKG
FGIITTPMAF PEVFTALQQG TVDGQENPLP VIISAKFDQV QKHLSLTGHV YSPCIFLMNK
ASFDKLSAAD KQAFLDAAKE GTKANRARVD EDDAKGVADL RAKGMTVIEN VDKAKFVAAL
APVNAQFEKD FGKANLDKIR DYK
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