| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3294 |
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| Symbol | |
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| ID | 7973690 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3471813 |
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| End bp | 3472859 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793879 |
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| Product | NAD-dependent epimerase/dehydratase |
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| Protein accession | YP_002945178 |
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| Protein GI | 239816268 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.238348 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCGTTG GCGAAGGAGA CAAGACCACC ATGCAGATCG TCATCACGGG CGGCGCCGGC
TTCCTGGGCG CACGCCTTGC CCGCACCCTG CTCAGGCAGG GCGAGCTTTC GCTGGCCGGT
GCGCCGGCAC GCGCCATTTC CCGCATCACG CTGGTCGACC GCGCCGCGCC GCCGGCCGAC
CTCGCGGCCG ACCCGCGCAT CGGCACCGCA CTCGGCGACC TGAACGAGCA GCTGGCTTCG
CCCGACGCCT CGCTCTGGAC CGGGGCCGAC GCCATCTTTC ACCTGGCCGC CGCGGTCAGC
GGCGAATGCG AGGCCGATTT CGACCTGGGC ATGCGCAGCA ACTTCGCCGC CACGCACGCG
CTGCTCGAAA AGGCGCGCGC GGTGGGCACC CGGCCGCTCT TGGTGTTTGC CAGCTCGCTC
GCGGTGTTCG GCGATTCACC CGAGCAGCCG CTGCCGCCGG TGATCGAGGA CCACACGCTG
CCGACGCCGC AGACCAGCTA CGGCATCCAA AAATTCATCG GCGAACAGCT GGTGGCCGAC
TACACGCGCA AGGGCTTCAT CCGCGGGCGC AGCGTGCGGC TCATGACGGT GAGCGTGCGC
CCCGGCCGGC CCAACGGCGC GGCGTCGGGC TTTTTCAGCG GCATGATCCG CGAGCCGCTC
GCGGGCATCC GCGCGGCCTG CCCGGTGCCC GACGAGACGC CGGTGGCGAT TGCGTCGCCG
GCGCGCACGG TCGAAGGCAT CCTTCGCGCC GCCGAGGCCA GCGACGGCGA ATGGGGACCG
CGCACCGCGC TCAACCTGCC CTCGCTTTCC ACCACGGTGG GCGACATGGC CGCAGCCCTC
GAGCGCGTGG CCGGCAAGGC CGCCACCGCC CTGCTCGACC GCACGCCCGA TCCGGCCATC
CAGCGCATCG TGAAGACCTG GCCCGGGCGC ATCGAGACCG TTCGCGCCGG CAAGCTCGGG
CTCACGGCCG ACGCCAGCTT CGAGGCGGTG ATCCGCGACT ACGTCCGTGA AAATCCCGAC
GCGGTCAAAC TGGTTATTGC GGCATAG
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| Protein sequence | MLVGEGDKTT MQIVITGGAG FLGARLARTL LRQGELSLAG APARAISRIT LVDRAAPPAD
LAADPRIGTA LGDLNEQLAS PDASLWTGAD AIFHLAAAVS GECEADFDLG MRSNFAATHA
LLEKARAVGT RPLLVFASSL AVFGDSPEQP LPPVIEDHTL PTPQTSYGIQ KFIGEQLVAD
YTRKGFIRGR SVRLMTVSVR PGRPNGAASG FFSGMIREPL AGIRAACPVP DETPVAIASP
ARTVEGILRA AEASDGEWGP RTALNLPSLS TTVGDMAAAL ERVAGKAATA LLDRTPDPAI
QRIVKTWPGR IETVRAGKLG LTADASFEAV IRDYVRENPD AVKLVIAA
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