Gene Vapar_3280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3280 
Symbol 
ID7973676 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3454378 
End bp3455646 
Gene Length1269 bp 
Protein Length422 aa 
Translation table11 
GC content67% 
IMG OID644793865 
Producthypothetical protein 
Protein accessionYP_002945164 
Protein GI239816254 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.439147 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACGCC GCCTGATTCT TCTCACGCCG CTCGCCGCCG CACTCGCCGC CACGGGCTGC 
GCGAGCCTGG CCCCCTCTGC GTCCACCACG CTCTCGCCCG CCCACTGGGA CGCCTTCAAC
CGGGCACAGA TCGAAGGCCT GATCGCCAGC CTCGGCAAAT CGAGCCCGGG CTACAGCGCC
GCCCGGCCGC CCTACGTGGT CTTCGACTGG GACAACACCA GCGTGTTCCT GGACATCGAG
GAAGCCTCGC TGATCTACCA GCTCGAAAAC CTGGTCTTCG GCGCCACGCC CGCGCAGCTC
GAAGTGGCGC TGCGCAAGAA CATCCCGAAG AAGGACTTCC TGCCGGCCTT CAACAATGCG
GCCGGCCAGC CGGTCAGCAT CGACCGCGTG GTGCCCGACA TCGTGGCCAG CTACACCTGG
CTCTACCAGA ACTACAGCGG CCTCAAGGGC AGCCAGCCGC TGGCCGCGGT GAAGCTGAGC
CCGCACTACG TCGCCTTCAC CGCCAAGGTG CGCTACCTGT ACGAGGCCAT CGGCGACACC
TTCGACCACG ACACCGCCTA CCCCTGGGTG ACCTACCTCT TCGTCGGCAT GACCGAAGCG
CAGGTGCGCA AGCTCACGGC CGCCACGGTG GCCTGGCAGC TGAAGGAACC CGTGGCCAAG
GTGAAATGGA CCTCGCCGGC CGCGCTGCCG GGCCAGGCCG GCGTGGTCTC GGTCAGCTGG
AAGAACGGCC TGCGGCTGCA GCCCGAGATG CAGGAGCTGT ACGCCGCCTT CCGCAACGCG
GGCTTCGACG TGTGGGTGTG CTCGGCCTCC TTCGTCGACG TGATCAAGGA GATTTCGTCG
AACCCCGCCT TCGGCTACAA CAACCCGCCC GAGCGCGTGC TGGCGATGGA GCTGGAGCGC
GACGCCAACG GCGTGATCCA GCCCGAGTAC CGGCGCGGCT ACGACCAGAC GCAGGGCCCC
GGCAAGACGA AGAACATCCA GCGCTTCCTG GTCAGCAAGT ACGGCTACGG CCCGAGCTTC
ATCGCCGGCG ACAGCGAGGG CGACCAGAAC ATGATGGCCG ACTTCGCAGA CACGAAGAAG
GTGCTGATCG TGAACCGGCT GCGCGATCCC AAGACCGACA TCGGCAAGTT CTCGGCCATG
GCGGTGCAGA ACTACGGCAA GCCCGACACG CGCTACCTGC TGCAGGGCCG CGACGACAAC
ACCGGCCAGT GGGTGGCTTC GCAGCTGCAC ACGCCTCTCG GCGCAGCCCA AGGCAAGGCA
TTGAAGTAG
 
Protein sequence
MQRRLILLTP LAAALAATGC ASLAPSASTT LSPAHWDAFN RAQIEGLIAS LGKSSPGYSA 
ARPPYVVFDW DNTSVFLDIE EASLIYQLEN LVFGATPAQL EVALRKNIPK KDFLPAFNNA
AGQPVSIDRV VPDIVASYTW LYQNYSGLKG SQPLAAVKLS PHYVAFTAKV RYLYEAIGDT
FDHDTAYPWV TYLFVGMTEA QVRKLTAATV AWQLKEPVAK VKWTSPAALP GQAGVVSVSW
KNGLRLQPEM QELYAAFRNA GFDVWVCSAS FVDVIKEISS NPAFGYNNPP ERVLAMELER
DANGVIQPEY RRGYDQTQGP GKTKNIQRFL VSKYGYGPSF IAGDSEGDQN MMADFADTKK
VLIVNRLRDP KTDIGKFSAM AVQNYGKPDT RYLLQGRDDN TGQWVASQLH TPLGAAQGKA
LK