Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3280 |
Symbol | |
ID | 7973676 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3454378 |
End bp | 3455646 |
Gene Length | 1269 bp |
Protein Length | 422 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644793865 |
Product | hypothetical protein |
Protein accession | YP_002945164 |
Protein GI | 239816254 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.439147 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACGCC GCCTGATTCT TCTCACGCCG CTCGCCGCCG CACTCGCCGC CACGGGCTGC GCGAGCCTGG CCCCCTCTGC GTCCACCACG CTCTCGCCCG CCCACTGGGA CGCCTTCAAC CGGGCACAGA TCGAAGGCCT GATCGCCAGC CTCGGCAAAT CGAGCCCGGG CTACAGCGCC GCCCGGCCGC CCTACGTGGT CTTCGACTGG GACAACACCA GCGTGTTCCT GGACATCGAG GAAGCCTCGC TGATCTACCA GCTCGAAAAC CTGGTCTTCG GCGCCACGCC CGCGCAGCTC GAAGTGGCGC TGCGCAAGAA CATCCCGAAG AAGGACTTCC TGCCGGCCTT CAACAATGCG GCCGGCCAGC CGGTCAGCAT CGACCGCGTG GTGCCCGACA TCGTGGCCAG CTACACCTGG CTCTACCAGA ACTACAGCGG CCTCAAGGGC AGCCAGCCGC TGGCCGCGGT GAAGCTGAGC CCGCACTACG TCGCCTTCAC CGCCAAGGTG CGCTACCTGT ACGAGGCCAT CGGCGACACC TTCGACCACG ACACCGCCTA CCCCTGGGTG ACCTACCTCT TCGTCGGCAT GACCGAAGCG CAGGTGCGCA AGCTCACGGC CGCCACGGTG GCCTGGCAGC TGAAGGAACC CGTGGCCAAG GTGAAATGGA CCTCGCCGGC CGCGCTGCCG GGCCAGGCCG GCGTGGTCTC GGTCAGCTGG AAGAACGGCC TGCGGCTGCA GCCCGAGATG CAGGAGCTGT ACGCCGCCTT CCGCAACGCG GGCTTCGACG TGTGGGTGTG CTCGGCCTCC TTCGTCGACG TGATCAAGGA GATTTCGTCG AACCCCGCCT TCGGCTACAA CAACCCGCCC GAGCGCGTGC TGGCGATGGA GCTGGAGCGC GACGCCAACG GCGTGATCCA GCCCGAGTAC CGGCGCGGCT ACGACCAGAC GCAGGGCCCC GGCAAGACGA AGAACATCCA GCGCTTCCTG GTCAGCAAGT ACGGCTACGG CCCGAGCTTC ATCGCCGGCG ACAGCGAGGG CGACCAGAAC ATGATGGCCG ACTTCGCAGA CACGAAGAAG GTGCTGATCG TGAACCGGCT GCGCGATCCC AAGACCGACA TCGGCAAGTT CTCGGCCATG GCGGTGCAGA ACTACGGCAA GCCCGACACG CGCTACCTGC TGCAGGGCCG CGACGACAAC ACCGGCCAGT GGGTGGCTTC GCAGCTGCAC ACGCCTCTCG GCGCAGCCCA AGGCAAGGCA TTGAAGTAG
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Protein sequence | MQRRLILLTP LAAALAATGC ASLAPSASTT LSPAHWDAFN RAQIEGLIAS LGKSSPGYSA ARPPYVVFDW DNTSVFLDIE EASLIYQLEN LVFGATPAQL EVALRKNIPK KDFLPAFNNA AGQPVSIDRV VPDIVASYTW LYQNYSGLKG SQPLAAVKLS PHYVAFTAKV RYLYEAIGDT FDHDTAYPWV TYLFVGMTEA QVRKLTAATV AWQLKEPVAK VKWTSPAALP GQAGVVSVSW KNGLRLQPEM QELYAAFRNA GFDVWVCSAS FVDVIKEISS NPAFGYNNPP ERVLAMELER DANGVIQPEY RRGYDQTQGP GKTKNIQRFL VSKYGYGPSF IAGDSEGDQN MMADFADTKK VLIVNRLRDP KTDIGKFSAM AVQNYGKPDT RYLLQGRDDN TGQWVASQLH TPLGAAQGKA LK
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