| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3263 |
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| Symbol | |
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| ID | 7973659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3437635 |
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| End bp | 3438201 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793848 |
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| Product | transcriptional regulator, LuxR family |
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| Protein accession | YP_002945147 |
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| Protein GI | 239816237 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4566] Response regulator |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.19467 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCCGAGA TCGATTACCG GCTGGCTTTT GAACAGGCAC CCGTCGGCAT GGTGGTGTCG
AGCAACCGCA CCATCGTGGC CTGCAACGAG CGGGTGTGCG AGATTTTCGG CGCAACGCCC
AGTGCCTTGG TCGGGCATTC ATTCAGCATC CTGTATCCGA GCGTGGCCGA GTTCGAGCGC
ATCGGCAAGC GCATGGAACC CTTCCTGAAC GCCAGCGGCC GCTATGCCGA CAACCGCATG
ATGAAGCGCC TGGGCGGCCT GCACGGCGCC ATTGCCGGCG AGACCTTCTG GTGCCATGTC
ACGGGCCACG CCATGAACCG CGCCGCGCCG CACGAGGCCG GCATCTGGAC CTTCGAAGAC
CTGGGATCAC GCCGCGCCGT GAAGGCCGAG CTCACGCCGC GCGAACGCGA GGTGGCCGCG
CAGGTGATGC GCGGGCTCAC GTCCAAGGAG ATCGGCAAGG CGCTCGGCAT CAGCCACCGC
ACAGTGGAGC TGCACCGGGC GCGGCTGATG CGCAAGTACG CGGCGGCGAC CACGGCGGAG
CTGGTGCAGA AGCTCATTGC GGGCTGA
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| Protein sequence | MPEIDYRLAF EQAPVGMVVS SNRTIVACNE RVCEIFGATP SALVGHSFSI LYPSVAEFER
IGKRMEPFLN ASGRYADNRM MKRLGGLHGA IAGETFWCHV TGHAMNRAAP HEAGIWTFED
LGSRRAVKAE LTPREREVAA QVMRGLTSKE IGKALGISHR TVELHRARLM RKYAAATTAE
LVQKLIAG
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