| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3248 |
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| Symbol | |
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| ID | 7973644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3422222 |
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| End bp | 3424567 |
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| Gene Length | 2346 bp |
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| Protein Length | 781 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793833 |
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| Product | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase |
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| Protein accession | YP_002945132 |
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| Protein GI | 239816222 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0620] Methionine synthase II (cobalamin-independent) |
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| TIGRFAM ID | [TIGR01371] 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACCC GTACCCACAT CCTCGGCTTT CCGCGCATGG GCGCCCACCG GGAACTCAAG
TTCGCGCTCG AAAAGCACTG GCGCGGCGAG ATCGACCGCG CCGCGCTGGA AGAAGTTGGC
GGCCAGCTGC GCGCACGCCA CTGGCAGGCC CAGCGCGACG CGGGGCTCGA CTACGTGACG
GTGGGCGACT TCGCCTGCTA TGACCACGTG GCCAACCACG TCCAGCTCTT CGGCTGCGAG
CCGGCGCGCT TCGGCTTCAA GGGCGACGAG CCCGAGCTGT CGCGCTATTT CAAGATGGCG
CGCGGCGTGG AAGACGAGGC TGGCCATGCG CACGATGCGG GCTGCAAGCA CGGCGCAGAG
GGCGCCTTCG CGCTGGAGAT GACCAAGTGG TTCGACACCA ACTACCACTA CCTCGTGCCC
GAGTTCACCG CGGCCACGCA GTTCAGGCTC GCCTCGACGC GGCTCTTCGA CGAGGTGGCC
GAGGCGCAGC AGGCCGGCCA TGCGGTCAAG GCCGTGCTGC TCGGCCCGCT GAGCTTCCTG
TACCTCGGCA AGGAGAAGCA ACAGGGCTTC GACCGCCTGT CGCTGCTCGA TGCACTGCTG
CCCGTGTACG AACAGGTGTT GAACCGGCTC AAGCAGCAGG GCGTGGAATG GGTGCAGATC
GACGAACCCA TCCTCGGGCT CGACCTGCCC GACGCCTGGC GCAACGCCTT CGAGCGCGCC
TACTGGCAGC TGGCGCGCAG CGCGTCCAAG CTGCTGCTGG CCACCTACTT CTCGCCGCTG
TTGGGCAACC TGCGCCTGGC CTGCCAGCTG CCGGTGGCAG GCCTGCACGT GGACGCCGTG
CGCGCGCCGC AGGAGCTGAC CGGCGTGGCC GACTGGCTCG CCACGCACAA GGTGCTGTCG
ATCGGCATCG TCGATGGCCG CAACATCTGG CGCACCGACC TGGACGCCGC GCTTGCCACG
CTGCGCCCGG TGATCGACAA GCGGCGCGGC GAGCTCTGGA TCGCACCATC GTGCTCGCTG
CTGCACGTGC CGTTCAGCCT GGCCGCGGAA GACAAGCTCG ATGCGGAACT CAGGTCTTGG
CTCGCCTTTG CCGTCGAAAA GCTCGGCGAA CTGCGCGTGC TGCGCGCCGT GCTCGATGGC
AGCGAAGACT TGGTTGCAGA AGAGCTCGAA GCCGCGCGCG CCGCAGTGAT TGCAAGGCGC
AGCAGCCCGC GCGTGCATCG CGCGGACGTG GCGCTGCGGC TCGCGCGCAG CGTGGCCGGC
GACGACCAGC GCGCATCCCC CTTCGGCCAG CGGCAGCGGC TGCAGCGCGC GCGCTTCGCA
TTGCCCGCGC TGCCCACCAC CACCATCGGC TCGTTCCCGC AGACCCAGGA GATCCGCGCC
GCGCGCGCCG CCTTCAAGCG CGGAGAGCTC GATGCCGCGG GCTACCGCGA GAAGATGCGC
GCCGAGATCG CGCTGGCCGT GCGCAAGCAG GAAGAACTGG GCATCGACGT GCTGGTGCAT
GGCGAGGCCG AGCGCAACGA CATGGTCGAG TACTTCGGCG AGCAGCTCGA CGGCTTTGCC
TTCACCGCCA ATGGCTGGGT GCAGTCGTAC GGCTCGCGCT GCGTGAAGCC GCCGGTCATC
TTCGGCGACG TGGCGCGCCC CGCGCCGATG ACGGTCGAGT GGACCGCCTA TGCGCAGAGC
CTCACCCAAC TGCCGATGAA GGGCATGCTG ACGGGCCCCG TCACCATCCT GCAATGGTCC
TTCGTGCGCG ACGACCAGCC GCGCAGCGTC ACCTGCGAGC AGATCGCCTG GGCGATCCGC
GACGAGGTGG TGGACCTCGA GGCGGCCGGC ATCGGCATCA TCCAGATCGA CGAGCCCGCC
ATCCGCGAAG GCCTGCCGCT GCGCCGCGCC GGCTGGCCGG CCTACCTGAA GTCGGCCACG
CGCGCCTTCC GCATCAGCGC CTCGGGCGTG TGCGACCAGA CGCAGGTCCA CACCCACATG
TGCTATTCGG AGTTCAACGA CATCCTGCCC GAGATCGCGG CCATGGACGC CGACGTGATC
ACCATCGAGA CCAGCCGCTC CGACATGGAG CTGCTGCGAG GCTTCGGTGG CGAGAACAGC
GCGGGCGGCT TCCGCTACCC GAACGAGATC GGCCCCGGCG TGTACGACAT CCATTCGCCG
CGCGTGCCCT CGGTGGGCGA GATCGTGCGC CTGATGCGCA AGGCCGCCGG CGTGGTGCCG
CCCGGGAACC TGTGGATCAA CCCCGACTGC GGCCTGAAGA CCCGCGGCTG GCCGGAGACC
GAGGCCGCGC TGTCGAACAT GGTGGCGGCG GCGAAGCTGC TGCGCGCTGA GTTGGCGGCG
GCCTGA
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| Protein sequence | MTTRTHILGF PRMGAHRELK FALEKHWRGE IDRAALEEVG GQLRARHWQA QRDAGLDYVT
VGDFACYDHV ANHVQLFGCE PARFGFKGDE PELSRYFKMA RGVEDEAGHA HDAGCKHGAE
GAFALEMTKW FDTNYHYLVP EFTAATQFRL ASTRLFDEVA EAQQAGHAVK AVLLGPLSFL
YLGKEKQQGF DRLSLLDALL PVYEQVLNRL KQQGVEWVQI DEPILGLDLP DAWRNAFERA
YWQLARSASK LLLATYFSPL LGNLRLACQL PVAGLHVDAV RAPQELTGVA DWLATHKVLS
IGIVDGRNIW RTDLDAALAT LRPVIDKRRG ELWIAPSCSL LHVPFSLAAE DKLDAELRSW
LAFAVEKLGE LRVLRAVLDG SEDLVAEELE AARAAVIARR SSPRVHRADV ALRLARSVAG
DDQRASPFGQ RQRLQRARFA LPALPTTTIG SFPQTQEIRA ARAAFKRGEL DAAGYREKMR
AEIALAVRKQ EELGIDVLVH GEAERNDMVE YFGEQLDGFA FTANGWVQSY GSRCVKPPVI
FGDVARPAPM TVEWTAYAQS LTQLPMKGML TGPVTILQWS FVRDDQPRSV TCEQIAWAIR
DEVVDLEAAG IGIIQIDEPA IREGLPLRRA GWPAYLKSAT RAFRISASGV CDQTQVHTHM
CYSEFNDILP EIAAMDADVI TIETSRSDME LLRGFGGENS AGGFRYPNEI GPGVYDIHSP
RVPSVGEIVR LMRKAAGVVP PGNLWINPDC GLKTRGWPET EAALSNMVAA AKLLRAELAA
A
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