| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3230 |
|---|
| Symbol | |
|---|
| ID | 7973463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3408468 |
|---|
| End bp | 3409769 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644793815 |
|---|
| Product | UDP-N-acetylglucosamine 1-carboxyvinyltransferase |
|---|
| Protein accession | YP_002945114 |
|---|
| Protein GI | 239816204 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0766] UDP-N-acetylglucosamine enolpyruvyl transferase |
|---|
| TIGRFAM ID | [TIGR01072] UDP-N-acetylglucosamine 1-carboxyvinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGCC TCATCGTGCA CGGCGGCACG CCGCTTCGTG GGCGCATCAC GCCTTCCGCC
AACAAGAACG CCGTGCTGCC GGTGCTGTGC GCCACGCTGC TCACGCGCGA GCCGCTGCGC
CTGCACGGCG TGCCCGACAT CACCGACGTG CGCAAGATCC TCGAGATCTT CCGCAGCCTG
GGCAGCCAGG TGCGCATGGA CCACGCCACC GGCACGCTGG AGCTGCACCA CCGCGACACG
GCCTTCGATG CCGCACGCGA CCGGCTGCCC GAGGAAATGC GCTCGTCGAT CATGCTGGTG
CCGCCGCTGC TCGCGCGCTT CGGCATCGCG CGGCTCGAAG ACAACGTCAA GGGCTGCACG
CTGGGCGTGC GCGAGATCGA TCCGCACGTC GATGTGTTCC GGCGCTTCGG CGGCGTGGTG
GAGCGTGCCA GCGGCTCGCT GCTGGTGCGC TGCGCCGGGC CGCTCGTGCC CGCGCAGCAT
TGGCTCGACT ACGCCTCCGT CACCACCACC GAGAACTTCG TGCTGTGCGC AGCCGCAGCC
AAGGGCAGCT CCACGCTCAC CAATGCCGCC TCCGAGCCGC ATGTGCAGGA GTTCTGCCGC
TTCATGGCGA TGCTGGGCGT GCGCATCGAG GGCATCGGCA CCTCGCGGCT CACGGTGCAC
GGCGGCGGCG TGCTGGGCGG CGGGGAATTC CGCTTCGACG AGGACTTCCA CGAGATCACC
ACCTTCCTTG CGCTGGGCGC CATCACGGGC GGCGACGTGG TCGTGCGCAA CAGCGCGCCC
GAGAACTTTC CGCTGATCGA CCGCACCTTC GACAAGTTCG GCGTGACGGT CACGCACGCA
GACGGCTGGT CGCGCGCCAG CAGCAACGGC CCGCTCAAGG TGCAGACGCC CTTCACCAGC
AACGTGCTCA CCAAGGTGGA AGCGGCGCCG TGGCCGTACT TTCCGGTCGA CCTGCTTCCG
ATCTTCATTG CGCTGGGCGT GCGCGCCCAG GGCAACGCGA TGTTCTGGAA CAAGGTGTAC
GACGGCGCGC TGGGATGGAC CGGCGAGCTG TCGAAGTTCG GCGCGCACGT GTTCTCCTCG
GACCCGCACC GGCTCATCAG CTTCGGCGGC AGCCCGCTGA CGCCGGCCGT GGTCGAGAGC
CCCTACATCA TCCGCGTGGC GATCGCGCTC TTCATGGTGG CGGCAAGCAT CGAAGGCCGC
TCCGAAATCC GCAACGCCGC GCCGATCCGC CGGGCCCACC CGCGCTTCGC CGAGAACCTG
CGCAGCCTGG GCGCGCAGGT GGAGTGGACG AGCGAGGAGT GA
|
|---|
| Protein sequence | MSSLIVHGGT PLRGRITPSA NKNAVLPVLC ATLLTREPLR LHGVPDITDV RKILEIFRSL
GSQVRMDHAT GTLELHHRDT AFDAARDRLP EEMRSSIMLV PPLLARFGIA RLEDNVKGCT
LGVREIDPHV DVFRRFGGVV ERASGSLLVR CAGPLVPAQH WLDYASVTTT ENFVLCAAAA
KGSSTLTNAA SEPHVQEFCR FMAMLGVRIE GIGTSRLTVH GGGVLGGGEF RFDEDFHEIT
TFLALGAITG GDVVVRNSAP ENFPLIDRTF DKFGVTVTHA DGWSRASSNG PLKVQTPFTS
NVLTKVEAAP WPYFPVDLLP IFIALGVRAQ GNAMFWNKVY DGALGWTGEL SKFGAHVFSS
DPHRLISFGG SPLTPAVVES PYIIRVAIAL FMVAASIEGR SEIRNAAPIR RAHPRFAENL
RSLGAQVEWT SEE
|
|---|
| |