| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3223 |
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| Symbol | |
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| ID | 7973456 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3401626 |
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| End bp | 3403488 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793808 |
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| Product | ABC transporter related |
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| Protein accession | YP_002945107 |
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| Protein GI | 239816197 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTCCGTT TCTTCGAAAA ACTGCTCCAT CCCTATCCCG CGGCCGAACC CGCGCCTCCG
CCGACGGGCT TCTTCGCATT CCTGTGGGCC TGCACCCAGG GCCTGCGCCT CAAGATGGCC
GTCATGGCGG CGCTCACCGC GGCCATCTCG GGCTTCGAGG CGCTGCTGTT CGCGATCCTC
GGGCGCATCG TCGACTGGCT CGGCGGCCAG GTGCCGTCGC GGCTGTGGGC CGAACGCGGC
GACACGCTGG CGTGGCTGGC CGCGCTGCTG GTGATCAGCA TCGGCGTGGT CGCGCTGCAG
ACCATCGTCA AGCACCAGAC GCTGGCGGTG AACCTGCCGA TGCGCCTGCG CTGGAACTTC
CACCGGGTGA TGCTGGGCCA GAGCATGGCC TTCTACCAGG ACGAGTTCGC GGGCCGCATC
ACGGCCAAGG TGATGCAGAC CGCGCTGGCG GTGCGCGACA CCCTGTTCGT GCTGGCCGAC
GTGGTGGTGG CCATGGGCGT GTACGTGGTG ACCATCATCG TGCTGGTGAC CGTGCTCGAC
GTGCAGCTGG TGCTGCCCTT CATCGTCTGG CTGGTGCTCT ATGCGGCTGC GCTGATGTAC
TTCGTGCCGC GCCTGGGCAA GGTGGGCAAG GCGCAGGCCG ACGCGCGCGC GCTGATGACC
GGGCGCGTGA CCGACGCCTA CACCAACATC GCCACCGTCA AGCTGTTCTC GCACACCCAG
CGCGAGGCCG GTTTCGCGCG CGAGGCGATG CGCGAGTTCA TGTACACGGG CTACGGCCAG
ATGCGGCTGG TGAGCGCCTT CGAGATCGTC AACCACACGC TCAGCATGGG CCTGACCGCG
GGCATGGCCG GCACCGCGCT GTGGCTCTGG TCGAACGGCA CGGTGGGCGT GGGCGCGGTG
GCTGCGGCCA CCGCGATGGC GCTGCGCCTG CAGGGCATGT CGCACTGGAT CATGTGGGAG
ATGACCAGCC TGTTCGAGAA CATCGGCACC GTGCAGGACG GCATGAAGAC GCTGTCGCGC
CCGCGCACCG TGCTCGATGC GCCCGATGCC GGCGTGCTCG AGGTGCCGCA CGGCGAGGTG
CGCTTCGAGC ACGCGAGCTT CCGCTATGCG GATGCGGGCC GCCGCGTCAT CGACGATCTG
AACCTGGTGG TGCGCCCGGG CGAGAAGATC GGCCTGGTCG GGCGCTCGGG CGCGGGCAAG
TCGACGCTGG TCAACCTGCT GCTGCGCTTC CATGACCTGG AAAGCGGCCG CATCCTGATC
GACGGGCGCG ACATCGCGCA GGTGACGCAG GATTCGCTGC GCAGCCACAT CGGCATGGTC
ACGCAGGACA CCTCGCTGAT GCACCGCTCG GTGGCCGACA ACATCGCCTA CGGCCGGCCC
GATGCAACCC CGGCCCAGAT CGAGGCCGCC GCGCGGCGCG CCGAGGCGCA CGACTTCATC
CAGACGCTGG GCGACGCCAG CGGCCGGCGC GGCTACGAGG CGCATGTGGG CGAGCGCGGC
GTGAAGCTCT CGGGCGGCCA GCGCCAGCGC GTGGCCATTG CGCGCGTGAT GCTCAAGGAC
GCGCCGATCC TGCTGCTCGA CGAGGCCACC AGCGCGCTCG ACTCCGAGGT GGAGGCCGCC
ATCCAGCAGA GCCTCTACCG GCTGATGGAA GGCAAGACCG TGATCGCGAT CGCGCACCGG
TTGTCGACCA TCGCGGCCAT GGACCGGCTC ATCGTGCTCG ACGAAGGCCG CGTGGTGGAA
GAAGGCGACC ACCGCACGCT GATGGCGCAG GGCGGGCTCT ATGCGCGGCT GTGGGCGCAC
CAGAGCGGCG GCTTCCTGGG CGACGACCTC GAGGAAGAAG ACGGCGAAGC GCTGCGGGCC
TGA
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| Protein sequence | MFRFFEKLLH PYPAAEPAPP PTGFFAFLWA CTQGLRLKMA VMAALTAAIS GFEALLFAIL
GRIVDWLGGQ VPSRLWAERG DTLAWLAALL VISIGVVALQ TIVKHQTLAV NLPMRLRWNF
HRVMLGQSMA FYQDEFAGRI TAKVMQTALA VRDTLFVLAD VVVAMGVYVV TIIVLVTVLD
VQLVLPFIVW LVLYAAALMY FVPRLGKVGK AQADARALMT GRVTDAYTNI ATVKLFSHTQ
REAGFAREAM REFMYTGYGQ MRLVSAFEIV NHTLSMGLTA GMAGTALWLW SNGTVGVGAV
AAATAMALRL QGMSHWIMWE MTSLFENIGT VQDGMKTLSR PRTVLDAPDA GVLEVPHGEV
RFEHASFRYA DAGRRVIDDL NLVVRPGEKI GLVGRSGAGK STLVNLLLRF HDLESGRILI
DGRDIAQVTQ DSLRSHIGMV TQDTSLMHRS VADNIAYGRP DATPAQIEAA ARRAEAHDFI
QTLGDASGRR GYEAHVGERG VKLSGGQRQR VAIARVMLKD APILLLDEAT SALDSEVEAA
IQQSLYRLME GKTVIAIAHR LSTIAAMDRL IVLDEGRVVE EGDHRTLMAQ GGLYARLWAH
QSGGFLGDDL EEEDGEALRA
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