| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3204 |
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| Symbol | |
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| ID | 7973437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3378406 |
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| End bp | 3381762 |
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| Gene Length | 3357 bp |
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| Protein Length | 1118 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793789 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_002945088 |
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| Protein GI | 239816178 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.115871 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGACC TCAGCGAAAA GCAGCTGCGC GGGCGCAACT CGGCCAAGGT GCATGCGCTG
CCCTTGCCTT TGCGCAAGAA GCCTGCGCCC ACGCTGCCCG ACTACGCCGA GCTGCACTGC
CTCAGCAACT TCAGCTTTCA GCGCGGCGCC TCCACGCCCG AGGAACTGGT CGAGCGCGCC
TACCAGCTCG GCTACACCGC GCTGGCCATC ACCGACGAAT GCTCGGTGGC GGGCATCGTG
CGCGCGCACG TCTGCCTGCG CGACCTGCCG GCCAAGCTCG AGGAATACGA GCGCGAGCAT
CCAGGCGAAC CACCGCTGCC GCGCAACCCC GGTTTCCGGC TGCTGTTCGG CAGCGAGTTC
CGCTTCGAGC GCTTCAGGCT GGTGGTGATC GCGAACGGCA CCGAAGGCTG GGGCAACCTC
TGCGAGTTCA TCACGGCCGC GCGCAACACC GAGCTGCCCA AGGGCGAGTA CCGCGTGAGC
TGGGAGCACA GCGACGTGGC CTCGCTGCAG GACTGCCAGG TTCTCTTCGT GCCGCACCGC
GAGCCGGGCG CCGCCGTGGA CGCGGCCACG CTGCATGAAG ACCTGCTGGC TGCCAAGGCG
CTTTACGCAG GCAACCTGTG GCTCGCGGTG GAAATGCTCA ACGAGCTCGA CGACGATCTC
TGGTTCGCCG CGCTGATGCA GGCGGGCGAG CAGACGGGCG TGCCGCTGGT GGCAGCCGGC
GACGTGCACA TGCATGCGCG CTCCGCCAAG CCGCTGCACG ACGTGCTGAC GGCCGTGCGC
GAAGGAAAGA CGGTGGCCGA GTGCGGCTTT GCGCTGCAGT CCAATGCCGA GCGGCACCTG
CGGCAGCGCG TGCGGCTGGC CGAGCTCTAT CTGCCCCGGA TGCTCGCGAA CACGCTGGTG
GTGGCCGAAC GCTGCCGCTT CGATCCCGAG GTGATCCGCG AGAACTACAA GTACCCGCTC
GAAACCGTGG GCAGCAGCGA AACGCCGGCC GAGACGCTGG TGCGCAAGAC GTGGGAAGGG
GCGCAGGTGC GTTTTCCGGA GGGCATCCCG GACAAGGTGC GGGCGCAGCT CGAGAAGGAA
CTCGCGCTGA TCGTCGAGAT GAAGTACGAG ATGTTCTTTC TCACGGTGGA AGACATCGTG
CGCTTCGCCA GGTCGCAGAG CATCCTCTGC CAGGGCCGCG GTTCCTCGGC CAATTCGGCG
GTCTGCTATT GCCTGGGCAT CACCGCGATC AATCCAGAAA AAGGCCACCT GCTGTTCGAG
CGCTTCCTGA GCCGCCACCG CCACGAGCCG CCCGACATCG ACGTCGACTT CGAGCACCAG
CGGCGCGAGG AAGTCATCCA GTACATCTAC CAGAAGTACG GCCGCGAACG AGCGGCCATC
GCGGCCGTCG TGATCTGCTA CCGCGCCCGC AGCGCCTTGC GCGACGTGGG CAAGGCCATG
GGCATCGACG AGCGGCTGAT CGACGAATTC GCCAAGGACC ACTACTGGTT CGATGACACC
GTGCTGGGCG AGCAGCTGTT CAAGGCGGCC GCGCGCGTCG GCGTGCAGGA AGACGAGCTC
AAGCTGGTGC AGTGGATCGA GATGACGCGG CGGCTCAAGG GCTTTCCGCG CCACCTGAGC
CAGCACGTGG GCGGCTTCGT GCTCACGCAC ACCCGGCTCA CGCGGCTGGT GCCGGTCGAG
AAGGCGTCCA TGAAGGACCG CTCCGTCATC CAGTGGGAGA AGGACGACCT CGAAGCCATG
GGCATGCTCA AGGTCGACGT GCTCGCGCTC GGCATGCTCA GCGCGATACG GCGCGGGCTC
GACCACATGA ACCGCTGGCG CGGCTCGATG GTGCAGATGC ACCACATCCC CAACGACGAC
CAGAAGGTGT TCGACATGAT CTGCGACGCC GACACCATCG GCGTGTTCCA GATCGAGAGC
CGGGCGCAGA TGTCGATGCT GCCGCGGCTC AAGCCGCGCT GCTATGAAGA CCTGGTGATC
GAGGTCGCGA TCGTGCGGCC CGGGCCCATC CAGGGCGGCA TGGTGCATCC CTACCTCAAG
CAGCGCGAGC GGGTGGCCAA GGGCCTGGAG ATCCATTACG AGAAGGAAGA ACTCAAGCCC
GCGCTGGAGC GCACGCTGGG CATTCCGATC TTCCAGGAGC AGGTGATGCA GATCGCGATG
ATCGCGGCCA GGTTCACCGC CGACGAGGCC GACCAGCTGC GCCGCGCGAT GGCGGCATGG
AAGCGCAAGG GCGGCCTCGA GAAGTTCCAC CACAAGCTCG TGAAGGGCAT GACCGACCAC
GGCTACAAGG CCGAGTTCGC CGAAGCCATC TTCAAGCAGA TCCTCGGCTT CGGCGACTAC
GGCTTTCCCG AAAGCCACGC CGCGAGCTTT GCGCTGCTGG TCACCGTGAG CAGCTGGCTC
AAGAACTACG AGCCGGCCTG CTTCCTGGCG GCGCTGCTCG ACTCGCAGCC GATGGGCTTC
TACAGCCCCT CGCAGCTGGT GCAGGATGCG CGGCGGCACG GCGTCGAGGT GCGGCCGGCC
GACGTGACCT GCAGCGACAT CGACACCACG CTCGAAGCCC GCGCCCCTGA TGCGCCGCGC
ATGCCGCCGG GCACCGATGC GCGCTATGCC GATCGCCTCG GCCGCGAGAA CCAGCCTGCG
GTGCGGCTTG GCCTGAACCG CATTTCGAGC CTCAGCAAGG AGGGCGCCAA GCGCCTGCTC
GAAGCGCGCG CCCAGGCGCC CTTCACCAGC ACCGAAGACC TCGCGCTGCG CGCCGAGCTC
GACGGCAAGG ACATGGCGGC GCTGGCCGCG GCCGATGCGC TGATGTCGCT GTCGGGCCAC
CGCCGCCAGC AGGTGTGGGA CGCCACCGCG CAGCGGCGCT CGCCGGCCCT GCTCAAGGGC
GTGCCGATCA ACGAGCCGGT GCTGCAGCTG CCCGCGGCGC CCGAGGGCGA GGAGATCGTC
GGCGACTACG CCGCGCTCGG CCTCACGCTG CGCCGCCATC CGCTCGCGCT GCTGCGCCCG
CGCCTCGCGC GCATGAAGCT CATGAGCGCG GAGCAGCTGC GCGCGCAGCC CAGCGGCCAG
ACCGTGCGCG CCTGCGGCAT CGTCAAGGGC CGCCAGCGCC CGGGCACTGC CAACGGCACC
ATCTTCGTCA CGCTCGAGGA CGAGACCGGC AACGTCAACG TGATCGTCTG GAGCCATGTC
ATCGAGGCCT GGCGCGAGCC GCTGCTGAAG TCGCACCTGC TCGCGGTGCA GGGCACCTGG
CAGCGCGACG ACGACAGCGG CGGCAAGGTG CAGCACCTGA TCGCCACCGG CTTCAAGGAC
CTGACGCCGC TCATGGGCCG GCTGGCGCAG AGCAACACCA GCCGCGACTT CCATTGA
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| Protein sequence | MPDLSEKQLR GRNSAKVHAL PLPLRKKPAP TLPDYAELHC LSNFSFQRGA STPEELVERA
YQLGYTALAI TDECSVAGIV RAHVCLRDLP AKLEEYEREH PGEPPLPRNP GFRLLFGSEF
RFERFRLVVI ANGTEGWGNL CEFITAARNT ELPKGEYRVS WEHSDVASLQ DCQVLFVPHR
EPGAAVDAAT LHEDLLAAKA LYAGNLWLAV EMLNELDDDL WFAALMQAGE QTGVPLVAAG
DVHMHARSAK PLHDVLTAVR EGKTVAECGF ALQSNAERHL RQRVRLAELY LPRMLANTLV
VAERCRFDPE VIRENYKYPL ETVGSSETPA ETLVRKTWEG AQVRFPEGIP DKVRAQLEKE
LALIVEMKYE MFFLTVEDIV RFARSQSILC QGRGSSANSA VCYCLGITAI NPEKGHLLFE
RFLSRHRHEP PDIDVDFEHQ RREEVIQYIY QKYGRERAAI AAVVICYRAR SALRDVGKAM
GIDERLIDEF AKDHYWFDDT VLGEQLFKAA ARVGVQEDEL KLVQWIEMTR RLKGFPRHLS
QHVGGFVLTH TRLTRLVPVE KASMKDRSVI QWEKDDLEAM GMLKVDVLAL GMLSAIRRGL
DHMNRWRGSM VQMHHIPNDD QKVFDMICDA DTIGVFQIES RAQMSMLPRL KPRCYEDLVI
EVAIVRPGPI QGGMVHPYLK QRERVAKGLE IHYEKEELKP ALERTLGIPI FQEQVMQIAM
IAARFTADEA DQLRRAMAAW KRKGGLEKFH HKLVKGMTDH GYKAEFAEAI FKQILGFGDY
GFPESHAASF ALLVTVSSWL KNYEPACFLA ALLDSQPMGF YSPSQLVQDA RRHGVEVRPA
DVTCSDIDTT LEARAPDAPR MPPGTDARYA DRLGRENQPA VRLGLNRISS LSKEGAKRLL
EARAQAPFTS TEDLALRAEL DGKDMAALAA ADALMSLSGH RRQQVWDATA QRRSPALLKG
VPINEPVLQL PAAPEGEEIV GDYAALGLTL RRHPLALLRP RLARMKLMSA EQLRAQPSGQ
TVRACGIVKG RQRPGTANGT IFVTLEDETG NVNVIVWSHV IEAWREPLLK SHLLAVQGTW
QRDDDSGGKV QHLIATGFKD LTPLMGRLAQ SNTSRDFH
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