| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3185 |
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| Symbol | |
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| ID | 7973418 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3354376 |
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| End bp | 3359382 |
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| Gene Length | 5007 bp |
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| Protein Length | 1668 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793770 |
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| Product | amino acid adenylation domain protein |
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| Protein accession | YP_002945069 |
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| Protein GI | 239816159 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1020] Non-ribosomal peptide synthetase modules and related proteins |
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| TIGRFAM ID | [TIGR01733] amino acid adenylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0410873 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCCG TTCTCCGCCC CGCCGCCACC GGCGGCCTCA TCGAATGCGT CATACCGACA
ACCGAGTCGC AGCGCGAGAT CTGGCTCGGC GCGTCGATGA GCACCGACGC CTCGCTGGCC
TACAACGAAT CGGTGCTGCT GCGCCTGCGC GGGCCGCTGG ACACCGGCGC CATGGCGCGT
GCCGTGGCGC AGCTGGTCGA ACGGCACCAG GCGCTGCGCG CCACCATCTC GCCGGACGGC
AGCTGCATGC TGGTCAGCCG GCCCGGCGAA GGCATGCTGG AGCAGCAGGA CCTGAGCGGC
CTCCTGCCCG AGGCCCGGGC GCTGGCGCTG AAGGCCGCGC ATGACGACGC GGTCTGCACG
CCCTTCGCGC TGGAGCACGG CCCGCTGTTC CGCGCGGTGC TCTTGCGGCT CGGCGATGCC
GAGCATGAGC TCGTGATGTC GGCCCACCAC GTGGTGTGCG ACGGCTGGTC CTGGATGGTC
ATCAGCGAGC AGCTCGGCCA TCTCTACGCC GAGCAGGCCG GCAGCGGGCA GCCGCTGAAG
CCCGCGCCCA GCTATGCGGA ATTCGCCGCC GAGGAAGCCG CCGAGGCTGC CCATCCCGAC
ATGCAGCCGC ACGTGGACTA CTGGCTGGAG CGCTTCGCGG GCGGCACCCT GCCGGTGCTC
GACCTGCCGG TGGACCATCC GCGGCCCGCC GTGCGCACCT TCCATTCGCG GCGCACCGAA
CGCCTGCTCG ACCGCCGCCT CGTGAGCAGC CTGCGCTCCA TGAGCGCGAA GACCGGCGCC
AGCCTGTTCG CGGGCCTGTT CAGCGGCTTT GTCGCCACGC TGCACCGGCT CACGGGGCAG
GACGACATCG TGGTGGGCAT TCCCGCGTCG GGCCAGGTCG CGCGCGACAT GCCCGGCCTG
GTGGGCCACT GCGTGAACCT GCTGCCGCTG CGCGTGGCGG TCCATGCCCA GCTTCGCTTC
GATGCCCTGC TGAGCGAATG CAGCACCACG GTGCTCGACG CCTTCGAGCA CCAGGCTCTC
ACCTATGGCG CCTTGCTGGG CAAGCTGTCG CTGCAGCGCG ACCCGAGCCG GCTGCCGCTG
GTGAGCGTGG CGTTCAACGT CGACCCCGAC GTGGCGAGCA GCGCGCAGAC CTTCCCGGGC
CTCGAAGTCG CGCAGGACAC GATCGCGCGC CAGTACGAGA ACTTCGAACT CTTCCTGAAC
CTGCGTCCGC TCGACGGCGG GCTGCAGATC GAGACGCAGT ACAACACCGA CCTGTTCGAC
GAGGCCACGG TGCAGCGCTG GCTCGACATC TTCGAATGCG TGCTGCGCTC GGCCGTGCGC
AACCCCGGCG AGACGGTCGG CCGGCTCGAG GTGCTGTCGC CCGAGGCCGC GCAGGAACTG
ATCGCGCTGC AGCCGCCGCG CACGCCGCTG GAGGGCGCGC CGCATGCGCT GGCCCGCTTC
CTGGCGCGCG TGCCGCTGCA GCCCGAGCGC CCCGCGGTGC GCGACGGTGC GCGGGTCTGC
AGCTATGCCG AGCTCGATGC CGAGTCCAAC CGCCTGGCGC GGGCGCTGCG CGCACGCGGC
GTGCGCCGCG GCGAGCGCGT GGGGCTGTGC CTGGAACGCA GCATCGAGAT GGTCACCGCG
CTGGTGGCGG TGCTCAAGGC GGGCGCCGCC TACGTGCCGC TCGACCCCGG GTTTCCGCAG
GCACGGCTGG AGCACTACGC CAAGGACGCC GGGCTCTGCC TGCTGCTGAC TTCGTCGGAC
ATCGCGGTGG CGCCGCGCAA CTGGCGCGCC GACGCGGCCG AGCGGGTGTT CGAGATCGAC
CGCCACAGCG CCTGGCAGCA GGAAAGCGGC GAGCCGCTGC CGCCGAGCGG CGATGATGCC
GGCCCCGACG ACGGCGCCTA CGTGATCTAC ACCTCGGGCT CCACCGGCCT GCCCAAGGGC
GTGTGCGCGC GGCACCACTC GGTGGTGGTC CTGCTCCAGT GGATGCAGCG CAAATCGGCC
CTGAGCCCGA ACGACCGGAT CGCCGCGGTG ACCACCCTGT CCTTCGACAT GGCGGTGCCG
GAGCTGCTGC TGCCGCTGTC GGGCGGCTCC GAGATCGTGA TGGTGCAGCG CGAGGTGGCC
ATGGACGGCA ACCGCCTGTG CCGGCTGCTC AAGGAAGAGC GCATCACCTT CCTGCAGGCC
ACGCCCGGCA TGTGGCAGCT GCTGCTCGAT GCCCAGTGGC CCGGCGCGCC CGGCTTCCGC
GGCTGGACTG GCGGCGAGCC GCTGCGGCCC AGCATGGCGT TCGCGCTGTG CGAGCGCATG
GACGAGTTCT GGAATGGCTA CGGACCGACC GAGACCACCG TGTATTCCAC GGCCTGGCTG
GTGCGGCCGG ACATCGTCGC CTCGCGCGGC GTGTCGATCG GCCACCCCGT CGACAACACC
GAGATCTGGA TCCTCGACGG CGACCTGCAG CCCTGCCCGA TCGGCGTTCC GGGCGAGATC
TGCATCGCGG GCGACGGCCT GGCGCTGGGC TACATCGACC GCCCCGAACT CACGGCCGAG
CGCTTCGTGG CCGCGCGCAT CTTCGGCAGC GCCAAGACGG TGTACCGCAC CGGCGACCGC
GGCCGCTGGC GCAACGACGG GCTCATCGAG CACCTGGGCC GGCTCGACTT CCAGCTCAAG
GTGCGCGGCT ACCGCATCGA GCCCGGCGAG ATCGAGGCGC GCTGCTGCGA GGTGGCCGGC
GTCTCGCGCT GCGTGGTGGT GGCGCGCGAA GACAGCCCCG GCGATGTCCG GCTGGTGGCC
TACCTGGCGC TGACGCCCGG CGTCGACTTC GAGCTGGACG TGCTGATGGC GCACCTGCGC
GAGAGCCTGC CGGCCTTCAT GCTGCCGCAG CACGTGGTGG CGCTGGACGC GCTGCCCACG
CTGCCCAACG GCAAGGTCGA CCGGGTCTCG CTGCCCGCGC CGCAGGCGGT GTCGCGCGAC
GAGGCACGGC GCGGCGCCGG CCCGCGCACC GAATGCGAAC GCAAGGTGCT CGCCACCATG
GAAAAGGTGC TGAGCCTGCC GGGCCTGGAC ATGCGCGACG ACTTCTTCAC GATGGGCGGG
CATTCGCTTT TGGCCTCGCG CCTGACCACG CTCCTGAGCC GCGAGTTCCA GATCACGCTG
CCGCTGCGCT CGCTGTTCGA AGCGCCCACG GCCGAGAAGC TGGCCGCCGT GGTCGAGGGC
CTGCAGCGCG TGGGCGCCGG CGCGCAGGCG CCGCTGCCCT GCCGCATCGA CCGCAAGACG
GCGCCGCTCA CGCCCGCGCA GGAGCGCATC CGCTTCATGG AAGACCTGCA CCCGGACCGC
TCGGTCTACA ACGCGCCCGC GGCGCAGCGC CTGACCGGCG TCTTCGATGC CGAGCGCTTC
GAGGCCGCGT TCAAGGAAAT CATCCGCCGC CAGCCCGCCA TGCGCACCCG CATGGGGACC
GATCCGCACA CCGGCCAGCC GGTCCAGCTG ATCGCGGAAG CGGTGGATTT CTCGCTGCCC
TTCGTCGACC TGCGCGGCCT GCCGGCCGAC CAGCGCGAGG CCGAGCTGGC CGAACGCATG
CAGGAGCTCG CCGACCGGCC GATCGACATC CACCGCGCGC CGATGCTGCA TGCGGCGGTG
TTCCAGCTCG ACGTGCACGA GCATGTGTTC GTCTTCGTGC CGCACCACCT GATCTGGGAT
GGCTGGTCCT TCGACCTGCT GCAGCGCGAA CTCTCCGCCA TCTACGACGC GGCGGAGCGC
GGCCGGCCGC ACGGGCTGGC GCCCATCGCC ACCACGCAGG GCGACTATGC CGAGTGGCTG
GCCCACTGGA TGAAGGAGCC CTCGTTCCAG GACCAGCTCG ACTTCTGGCT CAAGCGCTTT
GCGAGCGCGC CGATGCCGCG CCAGCCCAAC ACCGACATGC CGCGGCGCGC CGGCAAGAGC
GGCCAGGGCG GCGCCCACTG GATCCGCGTC GACCTGGCCA CCACGCAGCA GCTGCGCAAG
GTGGCGCGCG ACATGGACGT GACGCTCAGC ATGCTGACCT TCGGCGTGTA TGCGTTTGCC
ATGAGCAGCA TCATCGGCTC TGAGACCATC GTCATCGCCA ACCCGGTGCG CGGCCGCCAG
CAGCCCGAGA CGGAAGACGT GATCGGCTTC TTCAACAACG TGCTGCCGGT GTCGCTGCAG
GTCGGCCTGC AGCAGCCGCT CGCGGAGTTC ATGCGCTACG TGAAGCGCGA GCTGCTCTCG
CTCATGAACT ACCAGCAGGT GCCGTTCGAG CGCCTCATGG CGGAGCCCGC GCTGGCCGCG
CGCATCCGCG CGGTCGGGCC CTACCAGGCG ATGTTCTCGT TCCAGGATGC GCGCGACCGT
GCGCGCCGGC TCGGCAGCCT GCAGACGCGG CAGCTGCACC TGATGCAGCG CGGCGCCACC
GACGACATCG GCGTGTGGCT GATGGACAAG CCGCACGGGC TGGAAGGCGC GCTGATCTAC
AACGCCGACA TCTACCTGCG CGAGACCGGG GCGCAACTGC GCGACCGCTA TCTCGAGCTG
CTGCAGAAAG TGGCTGAACG TCCCGAGGCC TCGCTGGCCG AGCTCGCGAG CGAAGAAGGC
TCCGCGAGCG CCGCCTACCT GCGCAGGCTC GCGGCCGTCG ATCCGCTCAG GGCCGCGGCG
CCGGTGGATG CGCCGGCCGG TGCCGCGGCC GCGGAGGAAG GCAGCATCCT GATCCCCGAG
CACGCGCGGC TCGCGCAGAT CTGGGCCTCG GTGATCGGGA TCGACGTCAA CGACATCCGC
TCGAGCGACA ACTTCTTCGA CCTCGGCGGA GATTCGCTGC TGGTGCTGCG CGCGATCCAG
CAGGCCGAGA AGACGCTGGG CTACCGCGTG CAGCCGCGCC GCTACCTGTT CGAGAACCTC
GGGCAGATCG CCTCGTCCGC GCAGCAGGCC GCGGAGGACG CGGAGCTCTC GGATCTCGGA
AAACTGCCGC TCGGCAACCT GAAGGGCACG GCGCGCAGCG ACGGCCTGCT GAGCCGCGCC
TTCGGCAACT GGCTGCGCAA GGAGTGA
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| Protein sequence | MNAVLRPAAT GGLIECVIPT TESQREIWLG ASMSTDASLA YNESVLLRLR GPLDTGAMAR
AVAQLVERHQ ALRATISPDG SCMLVSRPGE GMLEQQDLSG LLPEARALAL KAAHDDAVCT
PFALEHGPLF RAVLLRLGDA EHELVMSAHH VVCDGWSWMV ISEQLGHLYA EQAGSGQPLK
PAPSYAEFAA EEAAEAAHPD MQPHVDYWLE RFAGGTLPVL DLPVDHPRPA VRTFHSRRTE
RLLDRRLVSS LRSMSAKTGA SLFAGLFSGF VATLHRLTGQ DDIVVGIPAS GQVARDMPGL
VGHCVNLLPL RVAVHAQLRF DALLSECSTT VLDAFEHQAL TYGALLGKLS LQRDPSRLPL
VSVAFNVDPD VASSAQTFPG LEVAQDTIAR QYENFELFLN LRPLDGGLQI ETQYNTDLFD
EATVQRWLDI FECVLRSAVR NPGETVGRLE VLSPEAAQEL IALQPPRTPL EGAPHALARF
LARVPLQPER PAVRDGARVC SYAELDAESN RLARALRARG VRRGERVGLC LERSIEMVTA
LVAVLKAGAA YVPLDPGFPQ ARLEHYAKDA GLCLLLTSSD IAVAPRNWRA DAAERVFEID
RHSAWQQESG EPLPPSGDDA GPDDGAYVIY TSGSTGLPKG VCARHHSVVV LLQWMQRKSA
LSPNDRIAAV TTLSFDMAVP ELLLPLSGGS EIVMVQREVA MDGNRLCRLL KEERITFLQA
TPGMWQLLLD AQWPGAPGFR GWTGGEPLRP SMAFALCERM DEFWNGYGPT ETTVYSTAWL
VRPDIVASRG VSIGHPVDNT EIWILDGDLQ PCPIGVPGEI CIAGDGLALG YIDRPELTAE
RFVAARIFGS AKTVYRTGDR GRWRNDGLIE HLGRLDFQLK VRGYRIEPGE IEARCCEVAG
VSRCVVVARE DSPGDVRLVA YLALTPGVDF ELDVLMAHLR ESLPAFMLPQ HVVALDALPT
LPNGKVDRVS LPAPQAVSRD EARRGAGPRT ECERKVLATM EKVLSLPGLD MRDDFFTMGG
HSLLASRLTT LLSREFQITL PLRSLFEAPT AEKLAAVVEG LQRVGAGAQA PLPCRIDRKT
APLTPAQERI RFMEDLHPDR SVYNAPAAQR LTGVFDAERF EAAFKEIIRR QPAMRTRMGT
DPHTGQPVQL IAEAVDFSLP FVDLRGLPAD QREAELAERM QELADRPIDI HRAPMLHAAV
FQLDVHEHVF VFVPHHLIWD GWSFDLLQRE LSAIYDAAER GRPHGLAPIA TTQGDYAEWL
AHWMKEPSFQ DQLDFWLKRF ASAPMPRQPN TDMPRRAGKS GQGGAHWIRV DLATTQQLRK
VARDMDVTLS MLTFGVYAFA MSSIIGSETI VIANPVRGRQ QPETEDVIGF FNNVLPVSLQ
VGLQQPLAEF MRYVKRELLS LMNYQQVPFE RLMAEPALAA RIRAVGPYQA MFSFQDARDR
ARRLGSLQTR QLHLMQRGAT DDIGVWLMDK PHGLEGALIY NADIYLRETG AQLRDRYLEL
LQKVAERPEA SLAELASEEG SASAAYLRRL AAVDPLRAAA PVDAPAGAAA AEEGSILIPE
HARLAQIWAS VIGIDVNDIR SSDNFFDLGG DSLLVLRAIQ QAEKTLGYRV QPRRYLFENL
GQIASSAQQA AEDAELSDLG KLPLGNLKGT ARSDGLLSRA FGNWLRKE
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