| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3176 |
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| Symbol | alaS |
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| ID | 7973408 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3339216 |
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| End bp | 3341840 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793760 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_002945060 |
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| Protein GI | 239816150 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAGC CCACAATCAC GGTCGCGGAC ATCCGCAAGA CCTTTCTCGA TTTCTTCGCT
TCCAAGGGCC ACACGGTGGT GGCCTCCAGC TCGCTGGTGC CGGGCAACGA TCCCACGCTC
ATGTTCACCA ACTCGGGCAT GGTGCAGTTC AAGGACGTGT TCCTCGGCGA AGACAAGCGC
CCCTACGTGC GCGCCGCCTC GGTCCAGGCG TGCCTTCGCG CCGGCGGCAA GCACAACGAC
CTGGAGAACG TGGGCTACAC CGCGCGCCAC CACACCTTCT TCGAGATGTT GGGCAACTGG
AGCTTCGGCG ACTACTTCAA GCGCGAATCG CTCACCTGGG CCTTCGAGCT GCTCACCAAG
GTCTACAAGC TGCCGGCCGA GAAGCTCTGG GCCACGGTCT ACATCGAGGA CGACGAGGCC
TACGACATCT GGACCAAGGA CATCGGCCTG CCGCCCGAGC GCGTGGTGCG CATCGGCGAC
AACAAGGGCG GGCGCTACAT GTCCGACAAC TTCTGGATGA TGGCCGACAC GGGTCCCTGC
GGGCCGTGCT CCGAGATCTT CTACGACCAC GGTCCCGAGA TCCCCGGCGG TCCGCCCGGT
TCGCCCGATG AAGACGGCGA CCGCTACATC GAGATCTGGA ACAACGTGTT CATGCAGTTC
GACATGCAGC CCGACGGCTC GGTCAAGAAG CTGCCCGCGC CCTGCGTCGA CACCGGCATG
GGCCTGGAGC GCCTGGCCGC GATCCTGCAG CACGTGCACA GCAACTACGA GATCGACATC
TTCGACGCGC TCATCAAGGC CGCCGCGCGC GAGACGGGCG AGAAGGACCT GGGCAACAAC
TCGCTCAAGG TGATTGCCGA CCACATCCGC GCCACCTCGT TCCTGGTGGC CGACGGCGTC
ATTCCGTCGA ACGAAGGCCG CGGCTACGTG CAGCGCCGCA TCGTGCGCCG CGCCATTCGC
CACGGCTACA AGCTGGGCCA GAAGAAGCCC TTCTTCCACA AGCTGGTGCC CGACCTCGTG
AAGCTCATGG GCGAGGCCTA CCCCAAGCTG GTGGCCGACG AGAAGCGCAT CACCGAAACC
CTCAAGGCCG AGGAAGAACG CTTCTTCGAG ACGCTGGCCA ACGGCATGGA AATCCTCGAC
GCGGCCCTGG CCGGCGACGC CAGGACGCTG CCGGGCGAGG TCGCCTTCAA GCTGCACGAC
ACCTACGGCT TTCCGCTCGA CCTGTCGGCC GACGTGTGCC GCGAGCGCGG CGTGAGCGTG
GACGAGGCCG GCTTCAATGC CGCCATGGAA AAGCAGAAGG CCGCAGGCCG CGCCGCCGGC
AAGTTCAAGA TGGACCGCAA CGTCGAATAC GGCGGCGCGG GCAACGTCTT CACGGGCTAC
GAACACCTCG AAGAAAACGC CAAGGTCGTG GCGCTGTACT TCGAAGGCGC GGCCGTGCAG
CAACTGAAGG AAGGCCAGCC CGGCATCGTG GTGCTCGACA CCACGCCTTT CTATTCGGAG
AGCGGCGGCC AGGTCGGCGA CCAGGGCGTG CTGGTGGCCG AGGGCGTGCA GTTCGGCGTG
GATGACACGC AGAAGATCAA GGCCGACGTG TTCGGCCACC ACGGCACGCA GACCCAGGGC
ACGCTCAAGG TGGGCGACAC GGTCAAGGCC GCGGTCGACA CCGCGCGCCG CGCCGCCACC
ATGCGCAACC ACTCGGTCAC GCACCTGATG CACAAGGCCC TGCGCGAAGT GCTGGGCGCG
CACGTGCAGC AGAAGGGCTC GCTAGTCGAT GCCGACAAGA CGCGCTTCGA CTTCGCGCAC
AACGCGGCCG TCACGCACGA CCAGATCCTC GAGATCGAGA AGCGCGTGAA CGCCGAGATC
CTGGCCAACA CCGAGACGCA TGCGCGCGTG ATGGACATGG AGTCGGCCCA GAAGACCGGC
GCCATGATGC TGTTCGGCGA GAAGTACGGC GAGAGCGTGC GCGTGCTCGA CATCGGCTCC
AGCCGCGAGC TCTGCGGCGG CACCCACGTG GGCCGCACGG GCGACATCGG CCTGTTCAAG
ATCGTGAGCG AAGGCGGCGT GGCCGCCGGC GTGCGCCGCA TCGAGGCCGT CACCGGCGCC
AATGCGCTCG GCTACCTGCA GGAGCTCGAA GCCACGGTGC AGAGCGTGGC CGCCACGCTC
AAGTCGCCCG CTGCCGAGCT GCAGGGCCGG CTCGTGCAGG TGCTGGAGCA GGTGAGGGCG
CTGGAGCGCG AAGTGGGTTC GCTCAAGGGC AAGCTCGCGT CGTCCAAGGG CGACGAGCTC
CTGGCGCAGG CGGTCGACGT CAACGGCATC AAGGTGCTGG CGGCCAAGCT CGACGGCGCC
GACGCCAAGA CGCTGCGCGA CACCATGGAC AAGCTCAAGG ACAAGCTCAA GACGGCGGTG
GTCGTGCTGG CCGCGGTCGA CGGCGCCAAG GTGCAGGTGG CTGCGGGCGT CACGAGCGAC
ACGGTCGGCA AGGTCAAGGC CGGCGAGCTG GTCAACTTTG TCGCGCAGCA GGTGGGCGGC
AAGGGCGGCG GCAAGGCCGA CATGGCCATG GCCGGCGGCA CCGATGCCGC GGGCTTGCCG
GCGGCGCTCC AATCGGTGCA AGCCTGGGTG GCGGAACGCA CCTGA
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| Protein sequence | MSQPTITVAD IRKTFLDFFA SKGHTVVASS SLVPGNDPTL MFTNSGMVQF KDVFLGEDKR
PYVRAASVQA CLRAGGKHND LENVGYTARH HTFFEMLGNW SFGDYFKRES LTWAFELLTK
VYKLPAEKLW ATVYIEDDEA YDIWTKDIGL PPERVVRIGD NKGGRYMSDN FWMMADTGPC
GPCSEIFYDH GPEIPGGPPG SPDEDGDRYI EIWNNVFMQF DMQPDGSVKK LPAPCVDTGM
GLERLAAILQ HVHSNYEIDI FDALIKAAAR ETGEKDLGNN SLKVIADHIR ATSFLVADGV
IPSNEGRGYV QRRIVRRAIR HGYKLGQKKP FFHKLVPDLV KLMGEAYPKL VADEKRITET
LKAEEERFFE TLANGMEILD AALAGDARTL PGEVAFKLHD TYGFPLDLSA DVCRERGVSV
DEAGFNAAME KQKAAGRAAG KFKMDRNVEY GGAGNVFTGY EHLEENAKVV ALYFEGAAVQ
QLKEGQPGIV VLDTTPFYSE SGGQVGDQGV LVAEGVQFGV DDTQKIKADV FGHHGTQTQG
TLKVGDTVKA AVDTARRAAT MRNHSVTHLM HKALREVLGA HVQQKGSLVD ADKTRFDFAH
NAAVTHDQIL EIEKRVNAEI LANTETHARV MDMESAQKTG AMMLFGEKYG ESVRVLDIGS
SRELCGGTHV GRTGDIGLFK IVSEGGVAAG VRRIEAVTGA NALGYLQELE ATVQSVAATL
KSPAAELQGR LVQVLEQVRA LEREVGSLKG KLASSKGDEL LAQAVDVNGI KVLAAKLDGA
DAKTLRDTMD KLKDKLKTAV VVLAAVDGAK VQVAAGVTSD TVGKVKAGEL VNFVAQQVGG
KGGGKADMAM AGGTDAAGLP AALQSVQAWV AERT
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