| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3172 |
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| Symbol | |
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| ID | 7973404 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3334869 |
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| End bp | 3335684 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644793756 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002945056 |
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| Protein GI | 239816146 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.882285 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGAAC CCAAAGCCGT TCCCGATCCC TCGAGCCTGC AAGCCCTGCT GGCCGAGCTG
CCCGCCAACC TGCTGGCGGG CCGCCGCATC CTCGTGACCG GCGGCGCGCG CGGGCTGGGG
CTTGCGTTTG CGCAGTGCAT CGCGGCGGCC GGCGCGCAGG TGGTGCTGGC CGACATCCTC
GGCGAGCTGG CCCAGGGCGA AGCCAAGGCG CTGCGCGATG CCGGCCACCG GGCGCATGCG
CTGGAAGTCG ACCTGTCGGA GCCGGCCTCG ATCGAAGCCT GCGCCGCGGA AGCGCTTCGC
CTGCTCGGTG GGCTCGACGG CCTCGTCAAC AACGCGGCCA TCACCAACTC GGGCGGACGC
GATGCGCACC AGCTCGACGT CGGCACCTGG GACCGCGTGA TGAACGTCAA CGTGCGCGGC
ACCTGGCTCA TGGGCCGGGC CTGCCGCCCC GCGCTTGCTG CCAGCGGGCG CGGCGCGGTG
GTCAACCTCG CGTCCGACAC CGCGCTGTGG GGCGCGCCCA ACCTGCTGGC CTATGCGTCG
AGCAAGGGCG CCGTCATTTC CATGACGCGC TCGCTGGCGC GCGAGTGGGG CGGCGACAAC
ATCACGGTGA ACGCCGTGGC GCCCGGCCTC ACGCTGGTGG AAGCCACCGA GTACGTGCCG
ATGGCCCGCC ACCAGAAGTA CCTCGAAGGC CGCGCCATCC CGCGCGAGCA GCAGGCCGCC
GATGTCTGCG GTGCCACGCT GTACCTGCTT TCCGGCCTCG CGCGCTTCGT GACGGGCCAG
CTGCTGGCCG TCAACGGCGG CTTTGCGATG CACTGA
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| Protein sequence | MTEPKAVPDP SSLQALLAEL PANLLAGRRI LVTGGARGLG LAFAQCIAAA GAQVVLADIL
GELAQGEAKA LRDAGHRAHA LEVDLSEPAS IEACAAEALR LLGGLDGLVN NAAITNSGGR
DAHQLDVGTW DRVMNVNVRG TWLMGRACRP ALAASGRGAV VNLASDTALW GAPNLLAYAS
SKGAVISMTR SLAREWGGDN ITVNAVAPGL TLVEATEYVP MARHQKYLEG RAIPREQQAA
DVCGATLYLL SGLARFVTGQ LLAVNGGFAM H
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