| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3171 |
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| Symbol | |
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| ID | 7973403 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3334286 |
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| End bp | 3334834 |
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| Gene Length | 549 bp |
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| Protein Length | 182 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644793755 |
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| Product | Cupin 2 conserved barrel domain protein |
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| Protein accession | YP_002945055 |
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| Protein GI | 239816145 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.480255 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCGATT TGTCCGAACA GCAGAAGATC ACCGATACCG CCGGCAGCAC GCTGGCGCAG
CCCGAAGGCA GCAGCCTGGC CGAGTGGATG AACAGCCGCA TCGCGCGCTA CGAAACCCGC
AAGTACGACT GGGATGCGCT CAAGTTCCAG GCCGACCTCG ACCCCAAGTT CCGCCGCGCG
CAGATGCGCT ACGTGGGCAC CGGCGGCACC GGCGTTGCGA AGGACGTCAA CACCGTGCCG
GCCGAGCACT TCACCTTCTC CACCATGGTG ATCCCGGCCG GCCATGAAGG CCCGCCGCAC
CTGCACACCG ACGTGGAGGA AGTGTTCTTC CTGATCCGCG GCAAGCTCAA GGTGGTGATC
GAAAAAGACG GCGAACGCTT CGAAACCATC ATGACGGACC GCGACCTGAT CTCGGTGCCG
CCCGGCGTGT ACCGCGAAGA AATCAACATC GGCGACGAAG ACGCGCTGAT GTGCGTGATG
CTCGGCGCCA AGAAGCCCGT GACGCCGACT TATCCGGCCG ACCATCCGCT CGCGAAGATC
AAGCGCTGA
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| Protein sequence | MSDLSEQQKI TDTAGSTLAQ PEGSSLAEWM NSRIARYETR KYDWDALKFQ ADLDPKFRRA
QMRYVGTGGT GVAKDVNTVP AEHFTFSTMV IPAGHEGPPH LHTDVEEVFF LIRGKLKVVI
EKDGERFETI MTDRDLISVP PGVYREEINI GDEDALMCVM LGAKKPVTPT YPADHPLAKI
KR
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