| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3169 |
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| Symbol | |
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| ID | 7973401 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3332512 |
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| End bp | 3333348 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793753 |
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| Product | transcriptional regulator, IclR family |
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| Protein accession | YP_002945053 |
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| Protein GI | 239816143 |
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| COG category | [K] Transcription |
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| COG ID | [COG1414] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.669044 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCACCC ACGACAACGA GACAATGGAA GAGGGCGGCG AGCGCTACAA CGTGCCGGCG
CTCGAACGGG GCCTGCGCGT GCTGTGCGAG TTCAGCCGCG AGAGCCGCAC GCTCTCCGCG
CCTGAACTGG GGCGCCGCCT CGACCTGCCG CGCTCGACCG TGTTCCGGCT TCTCACCACG
CTGGAGAACA TGGGTTTCCT CGAGCGCGCC GAAGGCGGGC GCGACTACCG CCTGGGCCTG
GCCGTGCTGC GCCTGGGCTT CGAATACCTG GCCTCGCTGG AGCTCACGCA GCTGGGCGCG
CCGCTGCTCA ACCGCCTGTG CGACGAGCTG CGCACGCCCT GCAACCTGGT GGTGCGCGAC
GGCCGCTCCA TCGTCTACGT GGCCAAGGTG GCGCCGCCCA CGCCGTTCGC AAGCTCGGTC
ACCGTGGGCA CGCGCCTGCC GGCCCATGCC ACGGTGCTCG GCCGCGTGCT GCTCGAAGAC
CTCACGCTGC CGCAGCTGCG CGCGCTCTAC CCGGAAGACA GGCTCGAGAC CTTCTCGCCG
AGCACGCCCA CCACCGTGAG CGAGCTGTTC GACATGGTGC AGGCCGACCG CACGCGCGGC
TACGTGCTGG GCGAAGGCTT CTTCGAATCG AACATCTCCA GCATCGCGGC GCCGGTGCGC
GACCACAGCG GCCACATCGT GGCGGCGCTG GGCGCCACCA TCACCTCGGG CCACATCGAG
GAGAACCGCA TGGACGAGAT GGTGCAGCGC GTGCGCGCCA CCGCCGAAGA AATTTCGGGC
CTCCTGAACT ATTCGCCCGC CCGCGCGCAA AAGGTGGTGC CGCTTCGCAG CGCATGA
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| Protein sequence | MATHDNETME EGGERYNVPA LERGLRVLCE FSRESRTLSA PELGRRLDLP RSTVFRLLTT
LENMGFLERA EGGRDYRLGL AVLRLGFEYL ASLELTQLGA PLLNRLCDEL RTPCNLVVRD
GRSIVYVAKV APPTPFASSV TVGTRLPAHA TVLGRVLLED LTLPQLRALY PEDRLETFSP
STPTTVSELF DMVQADRTRG YVLGEGFFES NISSIAAPVR DHSGHIVAAL GATITSGHIE
ENRMDEMVQR VRATAEEISG LLNYSPARAQ KVVPLRSA
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