| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3168 |
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| Symbol | |
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| ID | 7973400 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3331664 |
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| End bp | 3332515 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793752 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_002945052 |
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| Protein GI | 239816142 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.149072 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCACG CCATGACACA GCCATCTACT TCTTCTTCCT TCTTTGCCGC CGACGCACTG
GCGGGCCGCG TGGCCGTGGT CACGGGCGGT TCCTCGGGCA TCGGCCTGGC CACGGTCGAG
CTGCTGCTCG AATGCGGCGC CGCGGTGGCG CTGTGCGGCC GCAATGCCGG GCGGCTCGAC
AGCGCGGTGG CCGGCCTGCG CGAGAAGCAC GCGGGCGCGC GGCTCTTCGC GCAGCCCTGC
GACGTGCTCG ACGGCCCCTC GGTGCGCGCC TTTGCGGCCG CCAGCGAGGC CGCGCTCGGC
CCGGCCTCGA TGCTGGTCAA CAACGCGGGG CAGGGGCGCG TCTCCACCTT CGCCGACACC
GACGACGCGG CCTGGACCGA AGAGCTCAAG CTCAAGTTCT TCTCGGTCAT CAACCCCACG
CGTGCCTTCC TGCCGCAGCT CGCGGCGCAG CGCATCGTGC ACGGCGACGC CGCCATCGTC
TGCGCCAACT CGCTGCTCGC GCGCCAGCCC GAGCCGCACA TGGTCGCCAC CTCGGCCGCG
CGCGCCGGCC TGCTGAACCT CGTGCGCTCG ATGGCCACCG AATTCGCGCC GCAGGGCGTG
CGCGTGAACG GCATCCTGAT CGGCCTGGTC GAGTCGGGCC AGTGGCGCCG CCGCTTCGAG
GCGCGCGAAG ACAAGTCGCA GGACTGGGCC GCATGGAGCG GCCAGCTCGC GCAGAACAAG
CACATTCCGC TGGGCCGCCT GGGGCTTCCG ACCGAAGCCG CGCGCGCCAT TCTTTTTCTT
GCTTCACCGC TCGCGTCGTA CACGACCGGC AGCCACATCG ATATCTCTGG AGGCCTTTCG
CGCCATGCAT AA
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| Protein sequence | MNHAMTQPST SSSFFAADAL AGRVAVVTGG SSGIGLATVE LLLECGAAVA LCGRNAGRLD
SAVAGLREKH AGARLFAQPC DVLDGPSVRA FAAASEAALG PASMLVNNAG QGRVSTFADT
DDAAWTEELK LKFFSVINPT RAFLPQLAAQ RIVHGDAAIV CANSLLARQP EPHMVATSAA
RAGLLNLVRS MATEFAPQGV RVNGILIGLV ESGQWRRRFE AREDKSQDWA AWSGQLAQNK
HIPLGRLGLP TEAARAILFL ASPLASYTTG SHIDISGGLS RHA
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