| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3158 |
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| Symbol | |
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| ID | 7973390 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3321051 |
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| End bp | 3322157 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793742 |
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| Product | porin |
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| Protein accession | YP_002945042 |
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| Protein GI | 239816132 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.410423 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAT ACTTGATCAC GCTGGCCGCG GCCAGCGCGG CTGGCGGAGC GCTGGCCCAA
TCTTCCGTCA CGCTCTTCGG CGTGGTCGAC GCGGCCGTCA CCTACACGCG CGGCAGCGGC
GATGGGTCGG CCCACAAGGC GCAGCTGACC AACAGCGGCA ACATGTTCAG CCGCCTCGGC
TTTCGCGGCA CGGAAGACCT GGGCGGCGGG TACTCGGCCA ACTTCTGGAT GGAGATGGGC
CTGCAGAACG ACAGCGGCAC GGGCTTTCCG TCGAACTCGA ACAACCAGGC CAGCGGCAAC
GGCCCGGCGG GCGTGCTGAG CTTCAACCGC CGCTCGACGG TGAGCCTCGC GGGCCCGTTC
GGCGAAGTGC GCCTGGGCCG CGACTACGTG CCGGCATTCT GGAACACGGC CATCTTCGAT
CCCTTTGGCA CGGGCGGCGG CATCGGCGCC AACCAGATCT ATTTCTCGGG CCTGGGCGGC
CTGGCCGCAC CGACAGGCAC GCGCGCCTCG AACAGCATCG GCTACTTCCT GCCCGCGAAC
CTCGGCGGCT TTTACGGGCA GGTGATGTAT GCGATGGGCG AGAACGATTC GAACGCGCTG
CTGCCGGGCA CCAGGGTGCC AAGCAAGCAT GACGGCGAAC ACACCGGCGC GCGCTTCGGC
TACCAGAGCG GCGGCCTGCA CGTGGCCATT GCCACCGGCC GCACGCGCTA TGCGAGCGGC
GACCTGCGCG TGACCAACCT GGGCGCGGCC TACAGCTTCG GCCCTTCGCT CATGAACCTC
AAGCTCACGA GCGAGCTGTA CAAGGAATCG AAAGGCAGCA CCGACGCCAA GGGCGTGCTC
GTCGGCTTCC AGCTGCCCAT CGGGCCGGGC GAGATCAAGG CCTCGTATGC ACGCTACAAG
CTGGAACCCG CGAACGCGGT GCGCGAGCCC ACCTCGTCGA AACTGGCCAT CGGCTACGTG
CACAACCTGT CCAGGCGCAG CGCGCTGTAC GGCACGCTCG CGCGCATCAG CAACAGGAAC
GGCGCCGCGC AGGCGCTGGC GGGTGCCATC ACCATGCCGG GCCGCTCGTC CAGCGGCATC
GAGCTGGGCA TGCGGCACAT GTTCTAG
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| Protein sequence | MKKYLITLAA ASAAGGALAQ SSVTLFGVVD AAVTYTRGSG DGSAHKAQLT NSGNMFSRLG
FRGTEDLGGG YSANFWMEMG LQNDSGTGFP SNSNNQASGN GPAGVLSFNR RSTVSLAGPF
GEVRLGRDYV PAFWNTAIFD PFGTGGGIGA NQIYFSGLGG LAAPTGTRAS NSIGYFLPAN
LGGFYGQVMY AMGENDSNAL LPGTRVPSKH DGEHTGARFG YQSGGLHVAI ATGRTRYASG
DLRVTNLGAA YSFGPSLMNL KLTSELYKES KGSTDAKGVL VGFQLPIGPG EIKASYARYK
LEPANAVREP TSSKLAIGYV HNLSRRSALY GTLARISNRN GAAQALAGAI TMPGRSSSGI
ELGMRHMF
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