Gene Vapar_3146 details

Gene Information

• Locus tag: Vapar_3146
• ID: 7974356
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 3306239
• End bp: 3309661
• Gene Length: 3423 bp
• Protein Length: 1140 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644793731
• Product: histidine kinase
• Protein accession: YP_002945031
• Protein GI: 239816121
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.353593
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGCCGC CCTCGCCCTT GCCGCAAGCC CCCACCATGC AACCCGTCAC CGGCCAGAAG 
ATCTTCCGCA TCCGCCGCGA CTACAACGCG TGGGTCGCGA ACGAAACGCT GGAGGACTAT 
GCGCTGCGCT ACACGCCGCG CAGCTTTCGC AAGTGGTCGG AGTTCCGCGT CGCCAACGCG 
GCCTTCGGCG CCACCTCGTT CCTGGCGCTG GAGGCCATCG GCGGCGCCAT CGCGCTGAGC 
TATGGCTTCT CGAACGCGCT GTGGGCCATC CTGGTGGTGG GGCTCATCAC CTTCCTGACC 
GGCCTGCCGA TCTCCTACTA CGCGGCCCGG CATGGCGTGG ACATGGACCT GCTCACGCGC 
GGCGCGGGCT TCGGCTACCT GGGCTCCACC CTCACCTCGC TGATCTACGC GAGCTTCACC 
TTCATCTTCT TCGCGCTGGA GGCGGCCATC CTCGCGCTGG CGCTGCAGTT GTACCTGGAC 
TGGCCGCTGC CGCTGCTCTA CCTGCTGTCG TCGGTCGTGA TCGTGCCGCT GGTGATGCGC 
GGCATCACCC TGATCTCGGG CCTGCAGCTG TGGACGCAAC CGATCTGGAT CGCGCTGTTC 
GTCTGCCCCT TCATCGCGGT GCTGGTGAAG AAGCCCGGGC TGTATGCCGA CTTCACCGGC 
CTGGTGGGCC GCAGCTCCGA CAGCAGCGGC TTCGACCCGC TGATGTTCGG CGCCGCCGCC 
ACGGTGGCCT TCTCGCTGGT GGTGCAGATC GGCGAGCAGG TCGACTACCT GCGCTTCCTG 
CCCGAGAAGA CGGCCTCCAA CCGCGGCCGC TGGTGGGCCG CGGTGCTGGT GGCGGGGCCG 
GGCTGGATCG TGCCGGGCAT GCTCAAGATG ATGGGCGGCG CCTTCCTGGC CTTTCTGGCG 
CTCCAGCACG AGATTCCGGC CCGGCACGCG GTCGAGCCCA CGCTGATGTA CCTCACGGGC 
TTTTCGTACG TGCTGCGCGA TCCGGCCTGG GTGCTGGCGA TCACCACGCT GTTCGTGGTG 
GTCTCGCAGA TGAAGATCAA CCTCACCAAT GCCTATGCGG GCTCGCTGGC GTGGTCGAAC 
TTCTTCGCGC GGCTCACGCA CAGCCACCCG GGGCGCGTGG TGTGGCTGGT GTTCAACGTG 
GTCATCGCGA TCCTGCTGAT GACGCTGGGC GTGTTCGCGG CGCTCGAGCA CGTGCTGGGT 
TTCTACAGCA ACATCGCCAT CGCCTGGGTC GGCGCGCTGG TGGCCGACCT GGTCATCAAC 
AAGCCGCTGG GCTGGAGCCC GCGCACCATC GAATTCAAGC GCGCGCACCT GTACGACATC 
AACCCGGTCG GCCTGGGCGC GATGCTGGTG GCGGCCGCGC TCGCCATGCT GGCGTACTCC 
GGCATGCTGG GCCAGTGGGC GCGCGCGTTC TCGCCCTTCA TCGCGCTGAT CACGGCGCTG 
GTGGTCTCAC CGCTGCTGGC CTGGCGCACG CGCGGACGCT ACTACCTCGC GCGCAGCGAC 
ATCCGGCGCT GGACGCCGGG GCAGATCGTG AAATGCTCGG TGTGCGACAA CAGCTTCGAG 
TCCGAGGACA TGGCGCACTG CCCGGCCTAC AGCGCGCCGA TCTGCTCGCT GTGCTGCACG 
CTCGAATCGC GCTGCCACGA CCGCTGCAAG ACCGACTCGC GCGCGGCCGA GCAGATGAGC 
GGCTGGCTCC AGGCGCTGCT GCCGCCCGCG CTGTCAGGCC GGCTCAACTT TCGCGTGGCG 
CACTACCTGA TGGTGGCCAC CTCGCTGGTG GCGCTGCTGG CCACGGTGAT GGGCGTGGTG 
TATGCGCAGG AGGCCATCGT GGGCGCCGAT GCGGTGGACC CGGCGCTGCG CAGCGCCTTC 
CTCAAGGTGT TTGCGCTGCT GTCGCTGGTG GCGGCGGTGG CCGCCTGGTG GATCGTGCTG 
GGCAGCGAGA GCCGGCAGAT GGCGCAGGAG GAATCGAACC GCCACAACCA CCTGCTCACC 
GTCGAGATCG AGGCGCACCA GCGCACCGAC GCCGCGCTGC AGACCGCGAA GGAAGCCGCC 
GAAGCCGCCA ACCAGGCCAA GACCCGCTAC GTGGCCGGCA TGACGCACGA GCTGCGCACG 
CCGCTCAACA GCATCCTGGG CTACTCGCAG ATCCTGCTCA AGGGCGAGGC CGTGGCGCCG 
CCGCGCGAAG CGGTGCAGAC CATCCAGCGC AGCGGCGAGC ACATGCTGGG GCTGATCGAC 
GGGCTGCTCG ACCTGGCGCG CATCGAGGCC GGCCGGCTGC AGCTGGAGCC CGCCCCTCTC 
GCGCTGCCGG CCTTCCTGGA CGAGGTGGTG CACATGGTGC GGCCGCAGGC CGAGAACAAG 
GGCCTGGCCT TCATCTACAC CCACAGCGGG CGGCTGCCGC CCTGGGTGCA TGCCGATGCC 
AAGCGGCTGC GCCAGATCCT CATCAACCTG CTGGCCAACG CGGTGCGCTT CACCGACAGC 
GGCACGGTCA CGCTGCACGT GGATGCGCGG CGCGAGGTGC TGCGCTTCGA CGTGGTCGAC 
ACCGGCATCG GCGTGGCGCC GCAGGACCAC CAGCGCATCT TTCTTCCGTT CGAGCGCGGC 
GCCGCCGGGC GCCGGCGTGG CGAGCCCGGC ACGGGCCTGG GCCTCACCAT CACCGGCCTG 
CTCACGTCGC TGATGGGCGG CGAGCTGGCG CTGGCCGCCA CCTCGCCCGC GGGCAGTATC 
TTCAGCGTGC GGGTGTACCT GCGCGAAGTG GCCGACCCCG GACCGCAGGC GGAGACCCGC 
CGTCCGGTGT CGGGCTACAT CGGCGCGCGG CGCACGCTGC TGGTGGTGGA CGACCAGCCG 
GTGCAGCGCC AGATGCTGGC CGGCATGCTC GCGCCGCTGG GCTTCGAGGT GCGCGAGGCC 
GCGAGCGGCA CCGAATGCCT CGACAGCCTG CGCGAGAACC TGCCCTCCGC GATCCTGCTG 
GACCTCACCA TGGACGACAT GGATGGCTGG CAGACCGCGG CGCTGGTGCG CGCCTCGGGC 
TTCGACCGCC TGCCGATCAT CATCGTCTCG GCCAACATGT TCGAGAACCA GGGCGAACTG 
CTGCGCGCCG CGGGCTGCCA GGCCTTCGTG GGCAAGCCGG TCATCGAGTC GCAGCTGATC 
GCCACGCTGG AGCGGCACCT CGGCCTCGAA TGGCTGGCGT CGAACGATGC GATGCCGCCC 
ACCGTCGACA TGGCGCCGCG GCCGGTGCAG CTCGCGCTCT CCGAAGACGA CCGCGCCGAG 
CTGATGCGGC TGGTGCAGAT GGGCCACATG CGCGGCCTGC ACCAGGTGCT CGACCGCCTC 
GCCGCCGCCT CCCCGCCGGC CGCGGCCACC TGCACCTGGC TGCGCGGCAT GGCCAACCGT 
TTCGAACTCG ACAAGCTCCG CAAGGCACTC GCAGAACAAG ATGCAGACAC TCTCGCCCCC 
TGA 

 

Protein sequence

MPPPSPLPQA PTMQPVTGQK IFRIRRDYNA WVANETLEDY ALRYTPRSFR KWSEFRVANA 
AFGATSFLAL EAIGGAIALS YGFSNALWAI LVVGLITFLT GLPISYYAAR HGVDMDLLTR 
GAGFGYLGST LTSLIYASFT FIFFALEAAI LALALQLYLD WPLPLLYLLS SVVIVPLVMR 
GITLISGLQL WTQPIWIALF VCPFIAVLVK KPGLYADFTG LVGRSSDSSG FDPLMFGAAA 
TVAFSLVVQI GEQVDYLRFL PEKTASNRGR WWAAVLVAGP GWIVPGMLKM MGGAFLAFLA 
LQHEIPARHA VEPTLMYLTG FSYVLRDPAW VLAITTLFVV VSQMKINLTN AYAGSLAWSN 
FFARLTHSHP GRVVWLVFNV VIAILLMTLG VFAALEHVLG FYSNIAIAWV GALVADLVIN 
KPLGWSPRTI EFKRAHLYDI NPVGLGAMLV AAALAMLAYS GMLGQWARAF SPFIALITAL 
VVSPLLAWRT RGRYYLARSD IRRWTPGQIV KCSVCDNSFE SEDMAHCPAY SAPICSLCCT 
LESRCHDRCK TDSRAAEQMS GWLQALLPPA LSGRLNFRVA HYLMVATSLV ALLATVMGVV 
YAQEAIVGAD AVDPALRSAF LKVFALLSLV AAVAAWWIVL GSESRQMAQE ESNRHNHLLT 
VEIEAHQRTD AALQTAKEAA EAANQAKTRY VAGMTHELRT PLNSILGYSQ ILLKGEAVAP 
PREAVQTIQR SGEHMLGLID GLLDLARIEA GRLQLEPAPL ALPAFLDEVV HMVRPQAENK 
GLAFIYTHSG RLPPWVHADA KRLRQILINL LANAVRFTDS GTVTLHVDAR REVLRFDVVD 
TGIGVAPQDH QRIFLPFERG AAGRRRGEPG TGLGLTITGL LTSLMGGELA LAATSPAGSI 
FSVRVYLREV ADPGPQAETR RPVSGYIGAR RTLLVVDDQP VQRQMLAGML APLGFEVREA 
ASGTECLDSL RENLPSAILL DLTMDDMDGW QTAALVRASG FDRLPIIIVS ANMFENQGEL 
LRAAGCQAFV GKPVIESQLI ATLERHLGLE WLASNDAMPP TVDMAPRPVQ LALSEDDRAE 
LMRLVQMGHM RGLHQVLDRL AAASPPAAAT CTWLRGMANR FELDKLRKAL AEQDADTLAP