| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3142 |
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| Symbol | |
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| ID | 7974352 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3301694 |
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| End bp | 3302437 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644793727 |
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| Product | urea ABC transporter, ATP-binding protein UrtD |
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| Protein accession | YP_002945027 |
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| Protein GI | 239816117 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4674] Uncharacterized ABC-type transport system, ATPase component |
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| TIGRFAM ID | [TIGR03411] urea ABC transporter, ATP-binding protein UrtD |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.589399 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAATA CCGACTTCGC GCTGGCCGTG GAAGACCTCA GCGTCTCGTT CGACGGTTTC
AAGGCCATCG ACGACCTCAC GCTCTACATC GACAGGAACG AGCTGCGCGT GATCATCGGC
CCCAACGGCG CGGGCAAGAC CACGCTGCTG GACCTGATCT GCGGCAAGAC CCGCGCGAGC
GCCGGCAGCA TCAAGTTCAA GAACACCGAG CTCACCAAGA TGGCCGAGCA CAAGCGCGTG
CGGCTGGGCA TCGGCCGCAA GTTCCAGACG CCGTCGATCT ACGAGAACCT GAGCGTGTTC
CAGAACCTGG AGGTGTCGTT CCCGAAGGGC CGATCGGTGC TCGGCGCGCT GGCGTTCAAG
TGCGACGACG AGGTCAAGGC CAAGGTCCAG GCGGTGGCCG AGGACATCGG CCTGGCCGAC
CGGCTGCGCA CCGAGGCAGG CCTGCTGAGC CATGGCCAGA AGCAGTGGCT GGAGATCGGC
ATGCTGCTGA TGCAGGAGCC CGAGCTGCTG ATGCTCGACG AACCCATTGC CGGCATGAGC
GCGCGTGAAC GCGAGCTCAC GGCCGACCTG CTCAAGCGCA TCTGCCGGAA CCGCGCGGTG
ATCGTCATCG AGCACGACAT GGCCTTCGTG AAGCAGATCG CGCACAAGGT CACCGTGATG
CACCAGGGAA AGATCCTGGC CGAGGGGCCG ATGGAGAAGG TGCAGGCGGA TCCGAAGGTC
ATTGATGTCT ATCTGGGGCA CTAG
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| Protein sequence | MSNTDFALAV EDLSVSFDGF KAIDDLTLYI DRNELRVIIG PNGAGKTTLL DLICGKTRAS
AGSIKFKNTE LTKMAEHKRV RLGIGRKFQT PSIYENLSVF QNLEVSFPKG RSVLGALAFK
CDDEVKAKVQ AVAEDIGLAD RLRTEAGLLS HGQKQWLEIG MLLMQEPELL MLDEPIAGMS
ARERELTADL LKRICRNRAV IVIEHDMAFV KQIAHKVTVM HQGKILAEGP MEKVQADPKV
IDVYLGH
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