| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3128 |
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| Symbol | |
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| ID | 7974338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3287685 |
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| End bp | 3288848 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793713 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002945013 |
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| Protein GI | 239816103 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.151168 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACAGTT CTCGCAGGGA ATGGCTGGGC AAGGCGTGCG GGGCGCTGCT GCTGGGCGGC
GGCGTTCATC TGCCGGCGCT GTCGCAATCG TCGGGCCGCG CGGCGGGCGC ACGGGTGGTC
GTGCTGGGCC AGTCGGTGCC GCTGACAGGC GCCGCCGGCG AGATCGGGCT GGCCTTTGCG
GCCGGCAGCC GGCTCGCGGT GGCCGACTTC AACGAGCGCA ATGCCGCGAG CGGCCTGCAG
CTCAAGCTGC TGCAGCTGGA CGACGGCTAC GACGCGGGCC GGGCCGCCGC CAATGCACGC
ACGCTGCTTG GCACCGACAA GGCCGACATG CTGTTCGGCT TCGTGGGCAC GGCCAGCAGC
GACGCCGGCG CCAACGTGGC CGCGCAGCAG GGCAGCCTGC TGTTCGCGCC TTTTGCCGCC
GCCGACACGC TGCGCGAGGC CAGCCACCCC AACGTGTTCC ACGTGCGCCC CGGCATGATC
GACGAGGCGC TGAAGATCGT GCGCCAGTGC GCCACCGTGG GCCAGACGCG CATCGCGCTG
GTGGGCGACG ACGACGCCAT GGGCCGCGCC GGCCTGGCCG CCGTGCAGCA GGCCATCACC
GAGCTGAAGC TGCCCGCGCT GGTGGCCTCG GCGATGGTGC CGGCCGGCGG CGCCGACAAA
CTCGACGCGG CGCTGAAGAC GGTGCTGCAG CAGACGCCGC AGGCCATCGT GCTGGTGTCG
CTCTCGGGCA CCACGGCCAA TGCGATCCGC AAGCTGCGCA AGAGCGGCTA CAGCGGCAGC
TTCATGGCCT TCTCGATCGT GGGCATCGAC CCGCTCTATG CCGAACTGGG CAAGGACATC
GGCGGCATCG TGATCTCGCA GGTGGTGCCG TCGCCGCGGC CCTCGGCCAT TCCGATCGTC
AAGGAGTACC GCGCCGCGGT CGACAACTCC GACCAGACGC CCTCGTACGA AGGGCTCGAA
GGCTTCATCG CGGTCAAGGT GGCGGGCGAA GCGGTGCGCC GCGCGGGCCG CGGCTTCACC
ACGGCGAGCC TGCAGCGCGT GATGACCGCC ATGACCGACT ACGACGTGGG CGGCTTTCGC
GTCAACCTGC GCCCGGGCCT GCGCGATGCC TCGCGCACCA TCGACCTGAT CAGCATCTCC
GCCGACGGGC GCGTGCTGCG CTGA
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| Protein sequence | MDSSRREWLG KACGALLLGG GVHLPALSQS SGRAAGARVV VLGQSVPLTG AAGEIGLAFA
AGSRLAVADF NERNAASGLQ LKLLQLDDGY DAGRAAANAR TLLGTDKADM LFGFVGTASS
DAGANVAAQQ GSLLFAPFAA ADTLREASHP NVFHVRPGMI DEALKIVRQC ATVGQTRIAL
VGDDDAMGRA GLAAVQQAIT ELKLPALVAS AMVPAGGADK LDAALKTVLQ QTPQAIVLVS
LSGTTANAIR KLRKSGYSGS FMAFSIVGID PLYAELGKDI GGIVISQVVP SPRPSAIPIV
KEYRAAVDNS DQTPSYEGLE GFIAVKVAGE AVRRAGRGFT TASLQRVMTA MTDYDVGGFR
VNLRPGLRDA SRTIDLISIS ADGRVLR
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