| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3118 |
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| Symbol | |
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| ID | 7974328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3276397 |
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| End bp | 3279915 |
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| Gene Length | 3519 bp |
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| Protein Length | 1172 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644793703 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_002945003 |
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| Protein GI | 239816093 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGTTC ACCTGCGCCT GCACACCGAG TTTTCCGTCG TCGACGGCAC CAACCGCATC
GACGAAGTCG TCAAGGCCGC CGCTGCCGAC AAGCAGCCCG CACTGGCCAT CACCGACCTG
AACAACCTGT TCGGGGCGGT CAAGTTCTAC AAGCAGGGGC GAAGCAAGGG CGTCAAGCCG
GTCATCGGCG CTGAAATCTT CATCGAAGGC CTGGGCAAGG AGCCCGGCGT GCTCACCCGC
ATCGTGCTGC TGGTGCAGAA CATGGAGGGC TACCTGCACC TGTCCGAGCT GCTGGCGCGC
GCCTGGACGC AGAACGTGGG CCGCGGCCAG TCGCAGGCGG CCTGCAAGCT CGAATGGCTC
CAGGAGCTGC AGGGCGGACT GATCGCGCTG TCGGGCGCGC AGGCCGGCCC CCTGGGCGCA
CCGCTGCTGC AGGGGCAGGA AGAGCGCGCC GCCGAGCTGG CGCTGCAGCT GGCGGGCATG
TTCCCGCATC GTTTCTACAT CGAGCTGCAG CGCGCGGGCC GCCCCGAGGA CGAGCCGCAC
GTGATTGCCG CCGTGAAGCT CGCGGCCCGG CTGCGCCTGC CGGTGGTCGC GACGCACCCG
GTGCAGTTTG CCGAACGCCA GGACTACGAG GCGCACGAGG CGCGCGTCTG CATCTCGGAA
GGTGAAATCC TCGGCAACCC GCGCCGCGTG CGCAAGTTCA CCGAGGAGCA GTACTTCAAG
TCGAGCGCCG AGATGCAGGC GCTCTTTGCC GACGTGCCGA GCGCGCTGGC CAACACGGTC
GAGATCGCCA AGCGCTGCAA CCTCACGCTG GTGCTCGGCA AGCCGCAGCT GCCCGATTTT
CCGACGCCCT TCATCAGCGA AGGCGTGCGC ATGCCGATCG ACGAGTTCTT CCGCCAGGAG
TCCTTCCTGG GCCTGGAAGA ACGCCTGGCG CACCTCTATC CCGATCCGGC CAGGCGCGAG
GCCGAGCGGC CACGCTATGT GGAGCGGCTC GAGTTCGAGA TCAACACGAT CCTGAACATG
GGCTTCCCGG GCTACTTCCT GATCGTGGGC GACTTCATCA AGTGGGCCAA GAACAACGGC
TGCCCGGTGG GCCCGGGCCG GGGCTCGGGC GCCGGTTCGC TGGTGGCCTA TGCGCTGAAG
ATCACCGACC TCGATCCGCT TGAATACAAG CTGCTGTTCG AACGTTTCCT GAACCCCGAG
CGCGTCTCGA TGCCCGACTT CGACATCGAC TTCTGCCAGG GCAACCGCGA CCGCGTGATC
GACTACGTCA AGGACAAGTA CGGCCGCGAT GCCGTGAGCC AGATCGCCAC CTTCGGAACG
ATGGCCGCGC GCGCCGCCAT CCGCGACGTG GGGCGCGTGC TCGACATGAG CTACATGTTC
TGCGACGGCA TCAGCAAGCT CATTCCCAAC AAGCCGGGCC AGCCCGTCAC CATCCAGTAT
CCGCCCAACC CCAAGGTGGA AGGCGACAAG AACAACTACG CCATCGAGAT GGAGCCGCAG
CTCGCGGCGC GCATCGAGAA GGAAGAAGAA GTGCGCATGC TGGTCGAGCT CGCGCAGAAG
CTCGAAGGCA TGACCCGCAA CATCGGCATG CACGCGGGCG GCGTGCTGAT TGCGCCCGGC
AAGCTCACCG ATTTCTGCCC GCTCTACCAG CAGCCCGGCA GCGACTCGGC CGTGAGCCAG
TACGACAAGG ACGACGTGGA GGCCATCGGC CTCGTGAAGT TCGACTTCCT GGGCCTGGCC
ACGCTCACGA TCCTCGAGAT CGCGAAAGAG TTCATCGTCA AGCGCCACAA GGGCCAGGAG
AACTTCGCGT ACGAGAACAT CAAGCTCGAC GACCGCGAGA CCTACAAGCT GTTCTCCGAG
GGCAAGACCG AAGCGGTGTT CCAGTTTGAA AGCCGCGGCA TGCAGGGCAT GCTGAAGGAT
GCGCGGCCGA CGCGCCTGGA GGACCTGATC GCGCTCAACG CGCTGTACCG TCCGGGCCCG
ATGGACCTGA TCCCGAGCTT CGTGGCGCGC AAGCACGGCC GCGAAGAGGT GGAGTACCCG
CACCCGGCCG TGGCCGAGAT GCTCTCCGAG ACCTACGGGA TCATGGTCTA CCAGGAGCAG
GTGATGCAGA CCGCGCAGAT CCTGGGCGGC TATTCGCTCG GCGGCGCCGA CCTGCTGCGC
CGCGCCATGG GCAAGAAAAA GCTCGAGGAG ATGGCCGAGC ACCGCGAGAA ATTCCGCGCG
GGCGCGCTCT CGACGCACGG CATTCCCCAG GACAAGGCCG ACGAGATCTT CGACTTGATG
GAGAAGTTCG CGGGCTACGG CTTCAACAAG TCGCACGCCG CCGCCTACTC TCTGCTGGCG
TACCACACCG GTTGGCTCAA GGTCCACTAC ACGGCCGAGT TCTTCTGCGC CAACATGACC
GTGGAAATGG ACGACACCGA CAAGCTCAAG GTGCTGTTCG AGGACGCGCA GAAGAACTTC
GGCATCACCT TCGAGCCGCC GGACGTGAAC CGCGGCAACT ACCGTTTCGA GCCGGTCACC
GACAAGGTGA TCCGCTATGG CCTGGGGGCG GTCAAGGGCA CGGGCCAGCT CGCGGTCGAG
GCCGTGGTGC GCGCACGCGA AGAAGGCGGG CCCTTCAAGA GCTTGTTCGA TTTCTGCGTG
CGCATCGACC GCCAGCGCAT CAACAAGCGC ACGGTCGAAG CGCTCATCAA GGCCGGCGCC
TTCGATTCGA TCCAGCAGAA CCGCGCCTCG CTCATCGCCT CGGTCGACCG CGCCTTCGAG
TTTGCGGCCG CCACCGAGGC CAATGCCGCG CAGGTCGACA TCTTCGGCGA CAGCGAGCAC
GGCTCCGCCA CGCAGGAGCC CGAGCTGGTG GACGCCACGC CCTGGGGCGT GAAGGAGCGG
CTCACCTTCG AGAAGACGGC CGTCGGCTTC TATCTCTCAG GCCACCTGTT CGACGAGGTG
GCGCACGAGG TGCGGCGCTT CTGCAAGCGC GAGATCGGCG ACCTCATGGA CACGCGCGAG
CAGCAGGTGA TCGCGGGCAT CGTGAGCGAT TTCCGCGTGA TCAACGGCCA GCGCGGCCGG
CTGGCGATCT TCAAGCTCGA CGACAAGTCC GATGCCATCG ACGCCACCGC CGACGAGGCG
CTGATCAACG CGAACCGCAA CACCCTGAAG GACGACGAAC TGGTGATCGT GAGCGGCCGG
CTGCAGCCGG GCCGCGGCGG CTTCGAGGCC CGCTTCCAGG TGCAGCAGGT GTGGGACCTG
GCCACCGCGC GCTGCCGCTT CGGAAAATTC CTGCGCGTGG CGGTCAATGG CAAGGCGCCC
GACATCGCGC GCCTGGTGAA AGACTTTCCG CCGCGCACCG AGCAGAGCGA GCACGGCGAC
CTCGTGCAGG GGCTGCCGGT GCGCCTGTCG ATGGCGCGCG GCGGTGCGCA GGTCGAGCTG
CAGCTGGGCG AGCGCGCGAA GTTCTTCCCG ACCGACGCCG CGCTCGCGAG CTGGACGGCG
CAGGCGGAAG CCGGCAAGGC CTCGGTGGTC TACGAGTGA
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| Protein sequence | MFVHLRLHTE FSVVDGTNRI DEVVKAAAAD KQPALAITDL NNLFGAVKFY KQGRSKGVKP
VIGAEIFIEG LGKEPGVLTR IVLLVQNMEG YLHLSELLAR AWTQNVGRGQ SQAACKLEWL
QELQGGLIAL SGAQAGPLGA PLLQGQEERA AELALQLAGM FPHRFYIELQ RAGRPEDEPH
VIAAVKLAAR LRLPVVATHP VQFAERQDYE AHEARVCISE GEILGNPRRV RKFTEEQYFK
SSAEMQALFA DVPSALANTV EIAKRCNLTL VLGKPQLPDF PTPFISEGVR MPIDEFFRQE
SFLGLEERLA HLYPDPARRE AERPRYVERL EFEINTILNM GFPGYFLIVG DFIKWAKNNG
CPVGPGRGSG AGSLVAYALK ITDLDPLEYK LLFERFLNPE RVSMPDFDID FCQGNRDRVI
DYVKDKYGRD AVSQIATFGT MAARAAIRDV GRVLDMSYMF CDGISKLIPN KPGQPVTIQY
PPNPKVEGDK NNYAIEMEPQ LAARIEKEEE VRMLVELAQK LEGMTRNIGM HAGGVLIAPG
KLTDFCPLYQ QPGSDSAVSQ YDKDDVEAIG LVKFDFLGLA TLTILEIAKE FIVKRHKGQE
NFAYENIKLD DRETYKLFSE GKTEAVFQFE SRGMQGMLKD ARPTRLEDLI ALNALYRPGP
MDLIPSFVAR KHGREEVEYP HPAVAEMLSE TYGIMVYQEQ VMQTAQILGG YSLGGADLLR
RAMGKKKLEE MAEHREKFRA GALSTHGIPQ DKADEIFDLM EKFAGYGFNK SHAAAYSLLA
YHTGWLKVHY TAEFFCANMT VEMDDTDKLK VLFEDAQKNF GITFEPPDVN RGNYRFEPVT
DKVIRYGLGA VKGTGQLAVE AVVRAREEGG PFKSLFDFCV RIDRQRINKR TVEALIKAGA
FDSIQQNRAS LIASVDRAFE FAAATEANAA QVDIFGDSEH GSATQEPELV DATPWGVKER
LTFEKTAVGF YLSGHLFDEV AHEVRRFCKR EIGDLMDTRE QQVIAGIVSD FRVINGQRGR
LAIFKLDDKS DAIDATADEA LINANRNTLK DDELVIVSGR LQPGRGGFEA RFQVQQVWDL
ATARCRFGKF LRVAVNGKAP DIARLVKDFP PRTEQSEHGD LVQGLPVRLS MARGGAQVEL
QLGERAKFFP TDAALASWTA QAEAGKASVV YE
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