| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3115 |
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| Symbol | |
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| ID | 7974325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3274242 |
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| End bp | 3274964 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793700 |
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| Product | protein TolQ |
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| Protein accession | YP_002945000 |
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| Protein GI | 239816090 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0811] Biopolymer transport proteins |
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| TIGRFAM ID | [TIGR02796] TolQ protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.168396 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACCAAG ACCTCTCCAT CATCAATCTC CTGCTCCATG CGAGCTTCGT GGTGCAACTG
GTCGTGCTGC TGCTCGTGAT CGTCTCGATC GCCAGCTGGG CCGCGATCAT CCGCAAGTAC
TTCGCGCTGC GCCGCATGCG CGCGCTCAAC GACGACTTCG AGCGCGAGTT CTGGTCGGGC
ACCAGCCTGA ACGAGCTGTT CGCCTCGGCC GCGCAGAACG CCAAGTTCGC GGGGCCCATG
GAGCGCATCT TCGCCTCGGG CATGCGCGAG TACCAGAAGC TGCGCGAGCG CCATGTGAGC
GACGCCCCCA CGCTGCTCGA CGGTGCCCGC CGCGCCATGC GCGCGAGCTT CCAGCGCGAA
CTCGACGCGG CCGAGCAGAA CCTGTCGTTC CTGGCGACCG TCGGTTCGGT GTCGCCGTAT
GTGGGCCTCT TCGGCACGGT CTGGGGGATC ATGCATGCCT TCACCGGCCT GGCCGCGCTC
GCGCAGGTGA CGCTGGCCAC CGTGGCACCC GGCATTGCCG AAGCGCTGGT GGCCACCGCC
ATCGGCCTGT TCGCCGCCAT TCCGGCGGTG GTGGGCTACA ACCGCTTCGC ACGCGAGATC
GACAAGATCG CGATTGCCCT GGAGACCTAC ATCGAGGAGT TCTCCAACAT CCTGCAGCGC
AACCTCTCGG CCAACCCGGC CGCGGTGGCG TCGGCAACTT CGGCGGCTCC GGCCAACCGC
TGA
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| Protein sequence | MNQDLSIINL LLHASFVVQL VVLLLVIVSI ASWAAIIRKY FALRRMRALN DDFEREFWSG
TSLNELFASA AQNAKFAGPM ERIFASGMRE YQKLRERHVS DAPTLLDGAR RAMRASFQRE
LDAAEQNLSF LATVGSVSPY VGLFGTVWGI MHAFTGLAAL AQVTLATVAP GIAEALVATA
IGLFAAIPAV VGYNRFAREI DKIAIALETY IEEFSNILQR NLSANPAAVA SATSAAPANR
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