Gene Vapar_3111 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3111 
Symbol 
ID7974321 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp3271585 
End bp3272055 
Gene Length471 bp 
Protein Length156 aa 
Translation table11 
GC content68% 
IMG OID644793696 
Product6,7-dimethyl-8-ribityllumazine synthase 
Protein accessionYP_002944996 
Protein GI239816086 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0054] Riboflavin synthase beta-chain 
TIGRFAM ID[TIGR00114] 6,7-dimethyl-8-ribityllumazine synthase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.246776 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAGGTG CAAACAAGGG CGCTGACCAC AACACGCCGC TCGACGGAAA AGGCCTGCGC 
ATCGGCATCG TGCAGGCGCG CTTCAACGCC GACATCACCG ATGCGCTCGC CGCCGCCTGC 
CTGGCCGAGC TCGAGAAGCT GGGCGTGGCC GCGGAGGACA TCCACCATGT GCTGGTTCCC 
GGCGCGCTCG AAGTGCCGGT CGCGCTGCAG GCCATGGCCG TGCGCGGCGG CTACCACGCG 
CTGGTGGCGC TGGGCTGCAT CATCCGCGGC GAGACCTACC ACTTCGAACT GGTGGCCAAC 
GAATCGGGCG CGAGCGTGAG CCGCGTGGCG CTCGACCATC GCCTTCCCAT CGCCAACGCG 
ATCCTCACGA CCGAAAACCT CGAACAAGCC ATTGCCCGGC AGACCGACAA GGGCCGCGAC 
GCGGCCCAGG TGGCTGTCGA GATGGCGCGG CTGCTGGCCT CCCTCACATG A
 
Protein sequence
MQGANKGADH NTPLDGKGLR IGIVQARFNA DITDALAAAC LAELEKLGVA AEDIHHVLVP 
GALEVPVALQ AMAVRGGYHA LVALGCIIRG ETYHFELVAN ESGASVSRVA LDHRLPIANA 
ILTTENLEQA IARQTDKGRD AAQVAVEMAR LLASLT