| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3110 |
|---|
| Symbol | |
|---|
| ID | 7974320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3270425 |
|---|
| End bp | 3271579 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644793695 |
|---|
| Product | 3,4-dihydroxy-2-butanone 4-phosphate synthase |
|---|
| Protein accession | YP_002944995 |
|---|
| Protein GI | 239816085 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.245111 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCTT CCGTCACGCC CATCGGCGCT CCCCGCGGCA CGCGGGCACC CGCGCCGATT
TCCTCGGTCG AGGAGATCGT GGCCGAGCTC GCCGCCGGCC GCATGGTGAT CCTGGTGGAC
GAGGAAGACC GCGAGAACGA AGGCGACATC GTCATTGCGG CCGACCACAT CACGCCCGAG
GCCATCAACT TCATGGCGCG CCATGCGCGC GGGCTGATCT GCCTCACGCT CTCGCGCGAG
ATGTGCGAGC GGCTGCAGTT GCCGCCCATG GTGTCGCGCA ACGGCGCCAA GCATTCGACG
GCCTTCACCG TGTCCATCGA GGCGGCCGAA GGCGTGACCA CCGGCATCTC GGCGGCCGAC
CGCGCGCGCA CCGTTCAGGC GGCGGTGGCG CGCAACGCCG TGGCCAGCGA CCTGGTGCAG
CCCGGCCACA TCTTTCCGCT GCAGGCGGTG GACGGCGGCG TGCTGATGCG CGCCGGCCAT
ACCGAAGCCG GCTGCGACCT GGCCGCGATG GCCGGCTGCT CGCCCGCCTC GGTGATCTGC
GAGGTGATGA ACGAGGACGG CACCATGGCG CGCCTGCCCG ACCTGCAGAT CTTCGCGGCC
GAACACGGCC TGAAGATCGG CACCATTGCC GCGCTCATCG AGCACCGCAG CCGCACCGAA
TCGCTGGTCG AGAAGGTCGG CTGCCGCGAG ATCCAGACCG CCTGGGGCAG CTTCACCGCC
CATGCCTTCA CCGACAAGCC GAGCCGCGGC GTGCACCTGG CGCTGGTGCG CGGCAAGTGG
ACGCCCGAAG ACACGGTGTC GGTGCGCGTG CACGAGCCGC TCTCGGTGCT CGACGCGCTC
GAAATCAACC GCTCGCTGCA CTCGTGGAGC CTGGACGCCA GCCTCGCGCA CATCGCAAAC
GAGGGCAAGG GCGTGGCCGT GCTGCTCAAT TGCGGCGAAA CGGCTGGCGA ACTGCTCGCG
CAATTCGACG GCACCGCGCG GCCCGCGCAA GCCCCCGAGC GCGGCCGCAT GGACCTGCGC
AGCTACGGCA TCGGCGCGCA GATCCTGCGC GAATGCGGCG TGCACAAGAT GAACCTGCTC
GGCACGCCCC GCCGCATGCC GAGCATGGCC GCAGGCTACG GCCTCGAAAT TGCCGGCTAC
CTCACGAAAG ACTGA
|
|---|
| Protein sequence | MNASVTPIGA PRGTRAPAPI SSVEEIVAEL AAGRMVILVD EEDRENEGDI VIAADHITPE
AINFMARHAR GLICLTLSRE MCERLQLPPM VSRNGAKHST AFTVSIEAAE GVTTGISAAD
RARTVQAAVA RNAVASDLVQ PGHIFPLQAV DGGVLMRAGH TEAGCDLAAM AGCSPASVIC
EVMNEDGTMA RLPDLQIFAA EHGLKIGTIA ALIEHRSRTE SLVEKVGCRE IQTAWGSFTA
HAFTDKPSRG VHLALVRGKW TPEDTVSVRV HEPLSVLDAL EINRSLHSWS LDASLAHIAN
EGKGVAVLLN CGETAGELLA QFDGTARPAQ APERGRMDLR SYGIGAQILR ECGVHKMNLL
GTPRRMPSMA AGYGLEIAGY LTKD
|
|---|
| |