| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3106 |
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| Symbol | |
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| ID | 7974316 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3267321 |
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| End bp | 3267878 |
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| Gene Length | 558 bp |
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| Protein Length | 185 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793691 |
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| Product | type IV pilus modification protein PilV |
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| Protein accession | YP_002944991 |
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| Protein GI | 239816081 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4967] Tfp pilus assembly protein PilV |
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| TIGRFAM ID | [TIGR02523] type IV pilus modification protein PilV
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.457485 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCTGAGAG GGCGGAACGT GCCGATCAAT TCGATTCGCG CGCCGCGCGG CCAAGCGGGC
TTCTCGATGA TCGAGGCCCT GGTGGCCATC CTCGTGCTCT CGTTCGGCCT GCTCGCGCTG
GCCGGCTTCC AGTTGCGTGT GCTCTCCGAC AGCGTGGGCG CGAGCAACCA GAACATCGCC
GCGCTGCTGG CCGGCGACAT GGCCGATCGC ATCCGTGCGA ATCCCGTGGC CGGTGCCGTG
TCGGCCAGCC CCTACGTGGC CGGCTGGTCG GCGGCGAACG CCACCGCGCC CACCCCCGCC
TGCGCAGGAG CGAAGGCCCG TTGCACCGCC GCTCAATTGG CGGCCCACGA TCTGTGGACC
TGGAAGCAAA GGGTGGCGAG TGCGTTGCCC GGCGGCGTGG CCGACGTGCA GAGCAAGAAG
GCCGTCGGCG GCCTGCTGTT CGTGCACATC GCCTGGGACG AACCCGCTGC AGTCAACCCG
ATCGCACCCG ATTCGGCCTG GGGCTGCCCG CGCGGCAAGG CCTGCCAGGA AGCCATCGTC
GCGGTGCCAC AGCCATGA
|
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| Protein sequence | MLRGRNVPIN SIRAPRGQAG FSMIEALVAI LVLSFGLLAL AGFQLRVLSD SVGASNQNIA
ALLAGDMADR IRANPVAGAV SASPYVAGWS AANATAPTPA CAGAKARCTA AQLAAHDLWT
WKQRVASALP GGVADVQSKK AVGGLLFVHI AWDEPAAVNP IAPDSAWGCP RGKACQEAIV
AVPQP
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