| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3105 |
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| Symbol | |
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| ID | 7974315 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3266515 |
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| End bp | 3267324 |
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| Gene Length | 810 bp |
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| Protein Length | 269 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644793690 |
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| Product | Tfp pilus assembly protein PilW-like protein |
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| Protein accession | YP_002944990 |
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| Protein GI | 239816080 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4966] Tfp pilus assembly protein PilW |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAACA AAGCCTTCTC TCACCGCCTG CGGCAGGCCG GCTTCACCCT GGTCGAAATC
CTCGTCGCGC TGATCATCGG CATGCTGGTG GTGCTGGCCG CCATGGCCAG CATGCTCGGC
ACGCGCAGCA CCGCTGCGAC CGGCGACGAC GTCAATGTGC TGCACCATTC GTCGGCGCTG
GCATTCAGGC TGCTGGGCCA ACAGATCCGG CAGGCCGGCT ACTTCCCGAT CGATGCCACC
GGGCCGCTGT ACTACTTCGA TGTGAACGCG GGCACCAAGC TCGATAGCGA GCCGGCCTTC
TTTGCGATCA AGGGGCAGGA GGCGGCCGCC GGTTCGGTGA ACGACACGCT CAAGGTCGGC
TTTGCGCCGA ATCCGGATTT CTTCCATGAC TGCCTCGGCC AAGTGGCCAA GGACAAGGAC
TCAGGGGGAG CGGCGTACAA GCCCGCCTCT CCCGCGGACC CCGCGAACGT GCGCCTCATC
ACCAGTGAGT TCTACGTGGT CAACGGCGCC TTGCGGTGCA AGGGCAGCGG TCATACCACG
CCGCAGCCGA TCATCGACGG CGTCGAGCGC TTCGATGTCA TGTACGGCAT CGGCGATGCC
GGAACCGAAC GCGTGGTGCG CTACGTGACG GCCACGAACG TAACGAGCTT CGATCAGGTT
CGCACGGTGC GCGTGTGCCT GCAGCTTGCG GGTACTTCCA GGAGCAACCC GGGCGGCAGC
TACGTCGATT GCGATGGTTC GTCGCGGACC AGCAGCGACG GCAGGCTGCG CCGCGTCTAC
ACGGCGGTGT TCGCACTGCG CAATCTATGA
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| Protein sequence | MNNKAFSHRL RQAGFTLVEI LVALIIGMLV VLAAMASMLG TRSTAATGDD VNVLHHSSAL
AFRLLGQQIR QAGYFPIDAT GPLYYFDVNA GTKLDSEPAF FAIKGQEAAA GSVNDTLKVG
FAPNPDFFHD CLGQVAKDKD SGGAAYKPAS PADPANVRLI TSEFYVVNGA LRCKGSGHTT
PQPIIDGVER FDVMYGIGDA GTERVVRYVT ATNVTSFDQV RTVRVCLQLA GTSRSNPGGS
YVDCDGSSRT SSDGRLRRVY TAVFALRNL
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