| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3103 |
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| Symbol | |
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| ID | 7974313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3262434 |
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| End bp | 3265781 |
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| Gene Length | 3348 bp |
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| Protein Length | 1115 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793688 |
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| Product | type 4 fimbrial biogenesis protein PilY1 |
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| Protein accession | YP_002944988 |
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| Protein GI | 239816078 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGTGCG GCCTCGTGCT GGCGCAGACC GCCGGGCACG CCGCGCAATA TCCGCTGTCC
CAGGCGCCGC GCAACACGGC GGTCAAGGAG CCGGCGCCGA ATGTGATCGT GTCGGTCGAC
AACTCGGGCA GCATGGCGGC GTCGTCGCGA GCGTCGGACG GAAATTGGGC ACCGCCGGCC
GGAACACCCA CGCGGCTCGA AGCGCTGAAG ACCGCGCTCA GGGACAACTT CTCGGCGGCC
AACATTCCCA ACGGCCGGAT CCGCCTTTCC TGGCAGGCGA TGAACAACAA CAAGGACGGC
AGCTGCGTCG GCTTCTTCGG CGACATCGCC CCTGGCATCT ATCAGGCCGG CAGTTGTCTC
GTCAATGGCC GAGCCAATGC GAACCTGATG CGTTCGCTGG ACGACACGCA CCGCGCCAAT
TTCATGAGCT GGGTCGACGC CCTGGCCGCG GAAGGTGGAA CACCCTTGCA CGCCATGATG
ACCCGCGCTG GCGAATACAT GACGACCACC GGCCGGTACA GCCCGTACTC GAACGACCCT
GGCGTGGAGG GCGCCGCCCA ATCGAGCTGC CGCAAGGCCT TCCACATCTT CATGACGGAC
GGCGACTACA ACTTCTTCGG CTTCAACCCG GATCCCGCGG CGCTCAACAT GCCGGCCATC
GGCAACGCGG ATGGAACGAG TCGCGCCCTG CCTGACGCCG TGACCTATGT GCCGCGCGCG
CCCTACAAGG ACAACGCGGG TGCCGTCAGC AACAGCGCCA ACTGGAGGAA GTACGGTTCC
GGGTGGAGGC CGACGGCGGA ATACCGGCCC ACGTTGGCCG ACATGGCATT TCACTACTGG
GCCACTGACC TGCAGCCCGA TGTCCCCAAC AAACTCAAGA AGATCGTTGC CGAGCCCGGC
AATGCGACTG TAGGAAAGGC GACGGTCCCA GAGTACTGGA ACCCCAAGAA CGATCCCGCC
ACTTGGCAGC ACCTGATCAC CTACACCATC GGGTTCGGCG CTGCCTCGTC GTGGGCGGGC
ACGCCGGCCA TTTCAGCGAA TGCGTCGCAG CCGACCTACA GTGGGGACTA TGCAGGACTG
GTCGATGGAA CCGCTGCCTG GCGGAATCCG TTGGCGAGCA CGCTGGAAAC GACGGAGTTC
ACCTGGAACG ATGGAAGCGT GACAACGGGA ACCCCGCGCT GGAGTTCCGG CGGTGGTGCT
TATGGTTATT ACCACGAGAG GGCCGACAAC GCCGCCGCCG TGCGCATGGA CCTCTGGCAC
GCCGCGCTCA ACAGCCGCGG CACCTTCACG CCAGCGGCGA ATGCGAAGGC GCTCAGCGAT
GCCTTCCGGT CCATCCTCTC GCAGATCCTG CTCAACACCA GTGCCTCGCT GACCTCGATC
TCGGCCAGCG GCTCCAGGGT TTCGACCGCC ACTTCGGCCT ACCAGGCCGG CTACGACACG
GCCGACTGGT CGGGCAAGCT GACGGCCACT CCGTTCGGCA GCAATGGCAA GCTGGCCGCC
GCGCCCGCGT GGTCGGCGCG CGAACTGCTT GATGCGCGCA TGGCTGTGCC CGGCGCGCAC
GACGGCAATC GCAAGGTGCT GAGCTTCTCG GGCACCAGCG CCGCGGCCAG CGGGGCGGGC
GTGCCGTTTC GGTGGGCCAA CCTGAGCGAG GCGCAGAAGG CGGCGCTCAA GGGCAGCACC
GCCACCGACG CGGCAAGCAC CGCACTCGGC CAGGGCGTGC TCGACTTCCT GCGCGGCGAC
CGCAGCAACG AGGGCGCCGG CCTCAACCTG CGCAAGCGCG GCCATGTGCT GGGGGACATC
GTGGGCTCCA GCGTCCGGTA TGTGGGGAAG CCCAACAGCG GCTTCACCCA TGAAGGCTAT
GCCGCATTCG CCTCGACCAT CGCCCGCGCG CCGATGGTCT ATGTGGGTGC CAACGACGGC
ATGCTGCATG CCTTCAACGC GGGCACCGGC CAGGAGGCGT TCGCCTATGT GCCGGAAGGC
GTCTATGGCA CGGCGGCGGC GCCCCAGCTC AAGAAGCTCA GCGAAAGCAC CTACTCGCAC
AGGTACTACG TCGACGGCAG CCCGTTCGTG GCCGACATCT ACATGGGTTC GGCCGCCGAC
GCCAAGGCCA CCGACACCGA GAAGGCGAAG CTGTGGAAGT CCTTCCTCGT GGGGACGCTG
GGGGCGGGCG GCAAGGGGTA TTTCGTGCTC GACGTCACCA AGCCCGAGAA CATCGGCGAG
GCCAACGCCG CCGGCGTGGC CCTGATCGAT ACCACCGCCC TTGCCGACGA CGACCTCGGC
CACCAGTTCC AGCAACCCGT GCTCGATTCC TTTTCGAGGC GCGCGCTGCA GGTGGCGCGG
CTCAACAACG GCCGCAGGGC CGTGATCCTG GGCAACGGCT ACAACAGCAC GAGCGAGAAG
GCGATGCTGT GGATCCAGTA CCTCGACGGC GACAAGTCCG TGCTGAAGAT CCCCGCGCCG
GCCACGCAGG CCGCCGGCAC CGGCAACGGG CTGTCGGCAC CGCAGGTGGT GGACAGCAAC
GGCGATGGCA AGGTCGACTA CGTCTATGCC GGCGACCTGC TCGGCAATCT CTGGAAGTTC
GACCTGAGCA GCGCCAAGAG CAGCGACTGG AAGGCCACCC TGGGCGCATC GAGCCTGGAC
GACGCGCCGC TGTTCGCCGC CGGCGCCACG CAGCCGATCA CGGCCGCGCC GCTGGTCGTC
GACCATCCGC GCGGCGGCTA CATGGTGATG TTCGGCACCG GCCGGCTGTT TGCCGCCGGC
GACGAAGGCA GCACCGCCCA GCAGTACCTG TACGGCGTCT GGGACCGCGC CAACGGCAGC
ACGGGCACCG CGGCGCTGGC CGACCTGGTG GCGCAGACCA TCGGAACCGG CACGGTCAAG
GAAGGCGACG TGGAATTCCG CACCGCGTCG AACCACGGCG TGAGCTACAG CGGCTCGGGC
GGCAAGCGCG GCTGGTACCT CCAGCTGGGA ACCGCCGGCG AACGCATCGT CTATCCAGGC
GATGCGCTGA GCGGCAGCGC GGGGCTGTTC TCGTCCACCA TTCCCGGTTC GGCGAGCAAT
TCGCTCGACT GCGCGCCGGG CACCAGCGAC GACGGCTGGT CGATGGTGGT CGACTTCTTC
AGCGGCGTGG TCCCCGACGG CATTGCCTAC AACGGCTCCA CCAGCGCGCT GGGCAGCTAC
CTCGGCTTCC GGAACCACTC AGGCCGCGAC GACATCGTCT TCCGGCCGCA GGACGCCGCT
GAAAAAGGCA AGCACGTGAT CTGCAATGCG GCCGGCGGCT GCAACGAGAC CGAGCTGCCG
CAAGCCGTGC GCCGCTTCGG CTGGCGCAAC CTGATCTCGT CGAACTGA
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| Protein sequence | MLCGLVLAQT AGHAAQYPLS QAPRNTAVKE PAPNVIVSVD NSGSMAASSR ASDGNWAPPA
GTPTRLEALK TALRDNFSAA NIPNGRIRLS WQAMNNNKDG SCVGFFGDIA PGIYQAGSCL
VNGRANANLM RSLDDTHRAN FMSWVDALAA EGGTPLHAMM TRAGEYMTTT GRYSPYSNDP
GVEGAAQSSC RKAFHIFMTD GDYNFFGFNP DPAALNMPAI GNADGTSRAL PDAVTYVPRA
PYKDNAGAVS NSANWRKYGS GWRPTAEYRP TLADMAFHYW ATDLQPDVPN KLKKIVAEPG
NATVGKATVP EYWNPKNDPA TWQHLITYTI GFGAASSWAG TPAISANASQ PTYSGDYAGL
VDGTAAWRNP LASTLETTEF TWNDGSVTTG TPRWSSGGGA YGYYHERADN AAAVRMDLWH
AALNSRGTFT PAANAKALSD AFRSILSQIL LNTSASLTSI SASGSRVSTA TSAYQAGYDT
ADWSGKLTAT PFGSNGKLAA APAWSARELL DARMAVPGAH DGNRKVLSFS GTSAAASGAG
VPFRWANLSE AQKAALKGST ATDAASTALG QGVLDFLRGD RSNEGAGLNL RKRGHVLGDI
VGSSVRYVGK PNSGFTHEGY AAFASTIARA PMVYVGANDG MLHAFNAGTG QEAFAYVPEG
VYGTAAAPQL KKLSESTYSH RYYVDGSPFV ADIYMGSAAD AKATDTEKAK LWKSFLVGTL
GAGGKGYFVL DVTKPENIGE ANAAGVALID TTALADDDLG HQFQQPVLDS FSRRALQVAR
LNNGRRAVIL GNGYNSTSEK AMLWIQYLDG DKSVLKIPAP ATQAAGTGNG LSAPQVVDSN
GDGKVDYVYA GDLLGNLWKF DLSSAKSSDW KATLGASSLD DAPLFAAGAT QPITAAPLVV
DHPRGGYMVM FGTGRLFAAG DEGSTAQQYL YGVWDRANGS TGTAALADLV AQTIGTGTVK
EGDVEFRTAS NHGVSYSGSG GKRGWYLQLG TAGERIVYPG DALSGSAGLF SSTIPGSASN
SLDCAPGTSD DGWSMVVDFF SGVVPDGIAY NGSTSALGSY LGFRNHSGRD DIVFRPQDAA
EKGKHVICNA AGGCNETELP QAVRRFGWRN LISSN
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