| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3102 |
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| Symbol | |
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| ID | 7974312 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3261948 |
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| End bp | 3262394 |
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| Gene Length | 447 bp |
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| Protein Length | 148 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793687 |
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| Product | fimbrial protein pilin |
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| Protein accession | YP_002944987 |
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| Protein GI | 239816077 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.193045 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGGCCC GCAAAGAGCG GATTCGCCCG CGCGGCTTCA CGCTGGTCGA ACTCATAATC
GTGACGGCGG TGATCGCCAT CCTGGCCGCG ATCGCCTACC CGAGCTACAC GCGCTACGTG
TTGCGGGCCA AGCGGGCCGA TGCCAAGCAG CAGTTGCTGC AGGCGGCCCA ATGGACCGAG
CGCTACCTGA CGGCCAACGG CCAATATCCG CCTTTAACCG TTGCGCTGCC GGCGGGGCTG
AACCAGGCGC CATCCTCCGG CACGGCAAAC TACACCATCA GCTATGCGGC CCGGGACGCG
ACCAGCTACA CGCTGCGGGC CGTGCCGCAG GGCGCATCGG CCGCCGACGA ATGCAAAACA
CTCACGGTGA ACCAGCAGGG CGTCAAGCTG GCGGCCGGCC AGACCAGCGC TTCGAATGCG
CTGGTGCAGG CCTGCTGGAA CCGCTGA
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| Protein sequence | MQARKERIRP RGFTLVELII VTAVIAILAA IAYPSYTRYV LRAKRADAKQ QLLQAAQWTE
RYLTANGQYP PLTVALPAGL NQAPSSGTAN YTISYAARDA TSYTLRAVPQ GASAADECKT
LTVNQQGVKL AAGQTSASNA LVQACWNR
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