Gene Vapar_3101 details

Gene Information

• Locus tag: Vapar_3101
• ID: 7974311
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 3261489
• End bp: 3261932
• Gene Length: 444 bp
• Protein Length: 147 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 644793686
• Product: ATP-cone domain protein
• Protein accession: YP_002944986
• Protein GI: 239816076
• COG category: [K] Transcription
• COG ID: [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains
• TIGRFAM ID: [TIGR00244] transcriptional regulator NrdR

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.202897
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATGTC CTTTTTGCGG TCATCTCGAA ACGCAGGTCG TCGAGACCCG CGTTTCGGAA 
GACGCCGACT TCGTGCGCAG GCGCCGCCAG TGCAGCGCCT GCGACAAGCG CTTCACCACC 
TATGAGCGGC CAGACGTCAA CTTTCCGGTG GTCGTCAAGA AGGACGGCAG CCGCGCCGAC 
TTCGAATCGG GCAAGGTCCG CGCCTCGATG ATGCTGGCGC TGCGCAAGCG CCCGGTCAGC 
ATCGAGCAGA TCGACAACGC CCTGCTGCGC ATCGAGCAGA AGTTGCTGGC CAGCGGCCTG 
CGCGAGATCG ATTCGACCAA GGTGGGCGAA CTCGTGATGC GCGAGCTGAA AAAGCTCGAC 
AAGGTGGCCT ACGTGCGCTT TGCCTCGGTC TACCGCAGCT TCGAGGACGT GGACGAGTTC 
CGGCAGCTGC TGCGCGACAT CTGA 

 

Protein sequence

MKCPFCGHLE TQVVETRVSE DADFVRRRRQ CSACDKRFTT YERPDVNFPV VVKKDGSRAD 
FESGKVRASM MLALRKRPVS IEQIDNALLR IEQKLLASGL REIDSTKVGE LVMRELKKLD 
KVAYVRFASV YRSFEDVDEF RQLLRDI