| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3100 |
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| Symbol | glyA |
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| ID | 7974310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3260225 |
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| End bp | 3261469 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644793685 |
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| Product | serine hydroxymethyltransferase |
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| Protein accession | YP_002944985 |
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| Protein GI | 239816075 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.208714 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTACCACC GCAACATCCT GGTCGAACAG ACCGATCCCG AAATCTGGGC TGCCATCCAG
GCCGAAAACG CGCGCCAGGA ACACCACATC GAACTGATCG CGAGCGAAAA CTACGCCTCG
CCGGCCGTCA TGGCCGCGCA GGGCTCGCAG CTCACCAACA AATACGCCGA AGGCTACCCG
GGCAAGCGCT ACTACGGCGG CTGCGAGCAT GTCGACGTGG CGGAGCAGCT GGCCATCGAC
CGCGTCAAGC AGATCTTCGG CGCCGACGCC GCCAACGTGC AGCCGCATTG CGGCGCCTCG
GCCAACGAGG CCGTGATGCT GGCCTTTTTG AAGCCCGGCG ACACCATCAT GGGCATGAGC
CTGGCCGAAG GCGGCCACCT GACCCACGGC ATGCCCCTCA ACATGAGCGG CAAGTGGTTC
AACGTGGTGA GCTACGGCCT GGACGCCAAC GAAGCCATCG ACTACGACGC GATGGAACGC
AAGGCGCACG AGCACATGCC CAAGCTGATC ATCGCGGGCG CCTCGGCCTA TTCGCTGCGC
ATCGACTTCG AGCGCTTTGC CAAGGTGGCC AAGGACGTGG GCGCGATCTT CATGGTCGAC
ATTGCCCACT ACGCCGGGCT CGTGGCCGCG GGCGTGTACC CCAACCCGGT GCCGCATGCC
GACGTGGTCA CCTCCACCAC CCACAAGAGC CTGCGCGGCC CGCGCGGCGG CATCATCCTG
ATGAAGTCGC AGCACGAGAA AGCCATCAAC AGCGCGATCT TCCCGGGCCT GCAAGGCGGC
CCGCTCATGC ACGTGATCGC CGCCAAGGCC GTCGCGTTCA AGGAAGCCAT GTCGCCCGAG
TTCAAGGCCT ACCAGCAGCA GGTGGTCAAG AACGCCCAGA TCGTGGCCGA CACCCTCACC
GAGCGCGGCC TGCGCATCGT GAGCGGACGC ACCGAAAGCC ATGTGATGCT CGTCGACCTG
CGCGCCAAGG GCATCACCGG CAAGGAAGCC GAAGCCGTGC TGGGCAGCGC CCACATGACG
ATCAACAAGA ACGCGATCCC CAACGACCCC GAAAAGCCGA TGGTCACCAG CGGCGTGCGC
ATCGGCACCC CGGCCATGAC CACGCGCGGC TTCAGGGACG AAGAGGCGCG CATCACCGCG
AACCTGATCG CCGACGTGCT CGAGAACCCG CGCGACGCCG CCAACATCGA TGCGGTCCGC
GCAAAGGTGC ACGCGCTGAC GAGCCGGTTC CCGGTCTACC GCTGA
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| Protein sequence | MYHRNILVEQ TDPEIWAAIQ AENARQEHHI ELIASENYAS PAVMAAQGSQ LTNKYAEGYP
GKRYYGGCEH VDVAEQLAID RVKQIFGADA ANVQPHCGAS ANEAVMLAFL KPGDTIMGMS
LAEGGHLTHG MPLNMSGKWF NVVSYGLDAN EAIDYDAMER KAHEHMPKLI IAGASAYSLR
IDFERFAKVA KDVGAIFMVD IAHYAGLVAA GVYPNPVPHA DVVTSTTHKS LRGPRGGIIL
MKSQHEKAIN SAIFPGLQGG PLMHVIAAKA VAFKEAMSPE FKAYQQQVVK NAQIVADTLT
ERGLRIVSGR TESHVMLVDL RAKGITGKEA EAVLGSAHMT INKNAIPNDP EKPMVTSGVR
IGTPAMTTRG FRDEEARITA NLIADVLENP RDAANIDAVR AKVHALTSRF PVYR
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