| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3094 |
|---|
| Symbol | |
|---|
| ID | 7974304 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3250075 |
|---|
| End bp | 3250845 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644793679 |
|---|
| Product | UDP-2,3-diacylglucosamine hydrolase |
|---|
| Protein accession | YP_002944979 |
|---|
| Protein GI | 239816069 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2908] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01854] UDP-2,3-diacylglucosamine hydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.93705 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGAAC CTCCGGTTTT CAAGGAACTG CTCGCCCCGC CCGCGTGGCG CACCGTCGAC
CTGATCTCCG ACCTGCACCT GCAGGCCGAC GAGCCCGCCA CCTTCGAGGC CTGGCGCGGC
TATCTGGAGA CCACGCCGGC CGATGCGCTC GTCATCCTGG GCGACCTGTT CGAGGTGTGG
GTGGGCGACG ACGCCGCCGC CCTGCCCGGC TTCGAGGCCG AATGCGCCGA GCTGCTGCGC
CGCACGGCCG AGCGGCTGCC GGTGTACTTC ATGCACGGCA ACCGCGACTT CCTCGTGGGC
CCGGCGCTCG CTGCCCAGTG CGGCTTCACG CTGCTGGACG ACCCCACGGT GCTGGTGCTG
CATGGCGAAC GCTGGCTGCT GAGCCATGGC GACATCCTTT GCCTGGACGA CACCGACTAC
CTCCAGTTCC GCGCCCAGGT GCGCACGCCC GAATGGCAGG CCGCCTTCCT GGCCAGGCCG
CTGGCCGAGC GCCGTGCGCT CGCGCGCTCC ATGCGCGCGC AAAGCGAAGA CCGCAAGCGC
AATCCCTCGG CCGTCTGGGC CGACGTGGAC GGCGGCGCCG CGCGCCAGTG GCTGCAGCAG
GCGCGCGCGC ACACGCTGGT GCACGGCCAC ACGCACCGCC CGGCCGATCA CGACCTGGGC
GACGGCCTCA GGCGCCTGGT GCTCAGCGAC TGGGATGCCG CAGCCCATCC GCCGCGCGCG
CAGCTGCTGT GCCTGTCCCC CGCCGGCGCA CAGCGCGTCG ATCTGCGCTA G
|
|---|
| Protein sequence | MAEPPVFKEL LAPPAWRTVD LISDLHLQAD EPATFEAWRG YLETTPADAL VILGDLFEVW
VGDDAAALPG FEAECAELLR RTAERLPVYF MHGNRDFLVG PALAAQCGFT LLDDPTVLVL
HGERWLLSHG DILCLDDTDY LQFRAQVRTP EWQAAFLARP LAERRALARS MRAQSEDRKR
NPSAVWADVD GGAARQWLQQ ARAHTLVHGH THRPADHDLG DGLRRLVLSD WDAAAHPPRA
QLLCLSPAGA QRVDLR
|
|---|
| |