| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3092 |
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| Symbol | |
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| ID | 7974302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3248895 |
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| End bp | 3249494 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644793677 |
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| Product | peptidyl-prolyl cis-trans isomerase cyclophilin type |
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| Protein accession | YP_002944977 |
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| Protein GI | 239816067 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.885926 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGACGATCC AAGCCCCTTC CCTGTCCACC CGCTTCAGCC GCCGCGGCGC GCTCGTGCTG
GCCGCCTCGC TCGCACTTGC CGGCGCCGTC CATGCACAGC AGCCCGGCCC GCGCGTGAAG
CTCGCCACCT CGGCCGGCGA CATCCTGGTC GAGCTCGACC AGGCCAAGGC ACCCCAGACG
GTCGAGAACT TCCTGCAGTA CGTCAAGGAC AAGCACTACG ACGGCACCGT GTTCCACCGC
GTGATCGACG GCTTCATGAT CCAGGGCGGC GGCTTCACGG CCGACATGCA GCAAAAACCC
ACGCGCGCGC CCATTCCGCT CGAAGCCAGC AACGGCCTGA AGAACGACCG CTACACCATC
GCAATGGCGC GCACGGGCAA TCCGAATTCG GCCACCTCGC AGTTCTTCAT CAACGTGAAG
AACAACGATT CGCTCAACGC GCCCAACCCC GACGGCTACG GCTACACGGT GTTCGGCCGC
GTCGTGGCCG GCACCGAGGT GGTCGACAAG ATCCGTGCCG GGCAAACCGG TAACAAGGGC
GGCATGCAGA ACGTGCCGCT CGAGCCCATC ATCATCAAGT CCGCCACACT GGCGAAATAA
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| Protein sequence | MTIQAPSLST RFSRRGALVL AASLALAGAV HAQQPGPRVK LATSAGDILV ELDQAKAPQT
VENFLQYVKD KHYDGTVFHR VIDGFMIQGG GFTADMQQKP TRAPIPLEAS NGLKNDRYTI
AMARTGNPNS ATSQFFINVK NNDSLNAPNP DGYGYTVFGR VVAGTEVVDK IRAGQTGNKG
GMQNVPLEPI IIKSATLAK
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