| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3091 |
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| Symbol | |
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| ID | 7974301 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3248220 |
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| End bp | 3248810 |
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| Gene Length | 591 bp |
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| Protein Length | 196 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793676 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_002944976 |
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| Protein GI | 239816066 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.799703 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCACG TCGCGTTCTC CAAACTCTCC ATCGCCTTCG CACTGCTGTT CAGCCTGTGG
GGTTCCGCGG CCTACGCCAA CGACTACGAC GACGTGAACA CCCTGCTGCG CCAGGGCAAG
TCGAACGAGG CGCTCGCCAA GGCCGACGCC TACATCGCCG GCAAGCCGCG CGATCCGCAG
ATGCGCTTCC TGCGCGGCGT GATCCTCACC GAGCAGAAGA AGCAGAACGA GGCCATTGCC
GCGTTCACGC AGATGACGCA GGATTTCCCC GAACTGCCCG AGCCCTACAA CAACCTGGCC
GCGCTCTATG CAGCGCAGAG CAAGTTCGAC CAGGCGCGCG CCGCGCTGGA GCAGGCGCTC
AGGCTCAACC CCAACTACGC CACCGCGCAC GAGAACCTCG GCGACGTGTA CGCCCGCCTG
GCGGCCCAGG AATATGTGCG AGCGCAGCAA TTCGCCAGCA CCAACGCCAG CGTGGCGCCC
AAGCTCTCGC TGATCCGCCA GATCTTCACG CCCAAGGCCG AGGCCGATGC CGCGGCCCTG
CCGGCGGCAC CGCCTGAAGC CCGCAAGCCG GTCGGCCGCG CCAGCAAGTA A
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| Protein sequence | MKHVAFSKLS IAFALLFSLW GSAAYANDYD DVNTLLRQGK SNEALAKADA YIAGKPRDPQ
MRFLRGVILT EQKKQNEAIA AFTQMTQDFP ELPEPYNNLA ALYAAQSKFD QARAALEQAL
RLNPNYATAH ENLGDVYARL AAQEYVRAQQ FASTNASVAP KLSLIRQIFT PKAEADAAAL
PAAPPEARKP VGRASK
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