| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3090 |
|---|
| Symbol | cysS |
|---|
| ID | 7974300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3246648 |
|---|
| End bp | 3248027 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644793675 |
|---|
| Product | cysteinyl-tRNA synthetase |
|---|
| Protein accession | YP_002944975 |
|---|
| Protein GI | 239816065 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0215] Cysteinyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00435] cysteinyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.902916 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTGC GCATCTACAA CACGCTTTCG CGTGAACTGG AGGAGTTCTC CCCATTGCAA
CCGGGCCGGG TGCGCATGTA CGTGTGCGGC ATGACGGTCT ATGACCTCTG CCATCTGGGC
CATGCGCGCT CGATGATCGC CTTCGACCTG GTGCAGCGCT GGCTCAAGGC CAGCGGCCTG
GCCGTGACCT ACGTGCGCAA CATCACCGAT ATCGACGACA AGATCATTCG CCGCGCGGTC
GAGAACGGCG AAACCATCCG TTCGCTCACC GACCGCATGA TCGATGCGCT GCACGAAGAT
GCCGATGCGC TCGGCATCGA GCGGCCCACC CACGAACCCC GCGCCACCGA CTACATCCCG
CAGATGCTGT CGATGATCGG CACGCTCGAG AAGAAGGGCC TGGCCTACCG CGCGGAGAAC
GGCGACGTGA ACTACGCGGT GCGCAAGTTT CCGGGCTACG GCAAGCTCAG CGGCAAGTCC
ATCGACGAGC TGCACGCGGG CGAGCGCGTG GCGGTGCTCG ACGGCAAGGA CGATCCGCTC
GACCCGGTGC TCTGGAAGAG CGCCAAGCCG AGCGAACCCG AAGAAGTGAA GTGGGCCAGC
GAGTTCGGCC CGGGCCGCCC CGGCTGGCAC ATCGAGTGCT CGGCCATGGC TTGCGAGCTG
CTGGGTGAAA CGCTCGACAT CCATGGCGGC GGCGAAGACC TGCAGTTCCC GCATCACGAG
AACGAAATTG CGCAGAGCGA AGGCGCAACC GGCAAGCCGC TGGCCAACTA CTGGATGCAC
AACGGCTTCA TCGTGACCGA CAACGAGAAG ATGTCCAAGA GCCTGGGCAA CTTCTTCCTG
ATCCGCGACG TGCTCAAGAA GTACGACGCC GAGACCATCC GCTTCTTCGT CGTGCGGGCG
CACTACCGCC GCCCGCTCAA CTACAGCGAC GTGCATCTCG ACGACGCCCG CGCCTCGCTC
AAGCGGCTCT ACACGTCGCT CGACCTGGTC GCGCCGCAGG CGTTGGCGGC CATCGACTGG
AACGATCCGT ATGCGGCGCG CTTCAAGGCC GCAATGGACG AGGACTTTGC AACGCCCGAG
GCCGTGGCCG TGCTGTTCGA CCTGGCGGGC GAAGTGAACC GCACGCAGTC GCCCGCGCAG
GCCGGGCTGC TGAAGGCGCT CGGCGGATGC CTGAACATCC TGCAGGACGA CCCGAAGCGC
TTCCTGCGCG CGGGCACCAC GCTGGACGAG GCGACCATCC AGGCGCAGAT CGATGCGCGC
GCGGCCGCCA AGGCCGCAAA GAACTTCGCC GAGGCCGACC GCATCCGCAA CGACCTCCTG
GCGCAGGGCA TCGTGCTCAA GGATTCGCCC ACCGGCACAA CCTGGGCCGC AGCGCAGTGA
|
|---|
| Protein sequence | MSLRIYNTLS RELEEFSPLQ PGRVRMYVCG MTVYDLCHLG HARSMIAFDL VQRWLKASGL
AVTYVRNITD IDDKIIRRAV ENGETIRSLT DRMIDALHED ADALGIERPT HEPRATDYIP
QMLSMIGTLE KKGLAYRAEN GDVNYAVRKF PGYGKLSGKS IDELHAGERV AVLDGKDDPL
DPVLWKSAKP SEPEEVKWAS EFGPGRPGWH IECSAMACEL LGETLDIHGG GEDLQFPHHE
NEIAQSEGAT GKPLANYWMH NGFIVTDNEK MSKSLGNFFL IRDVLKKYDA ETIRFFVVRA
HYRRPLNYSD VHLDDARASL KRLYTSLDLV APQALAAIDW NDPYAARFKA AMDEDFATPE
AVAVLFDLAG EVNRTQSPAQ AGLLKALGGC LNILQDDPKR FLRAGTTLDE ATIQAQIDAR
AAAKAAKNFA EADRIRNDLL AQGIVLKDSP TGTTWAAAQ
|
|---|
| |