| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3077 |
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| Symbol | |
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| ID | 7971946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3232753 |
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| End bp | 3234801 |
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| Gene Length | 2049 bp |
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| Protein Length | 682 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793661 |
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| Product | GAF modulated sigma54 specific transcriptional regulator, Fis family |
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| Protein accession | YP_002944962 |
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| Protein GI | 239816052 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATTGA CGCTGAGACA AGGCGATCGA CACGCTGACC GTGTGCTCGA CGTGGTGAGG
CGGGGCTTTC ATGAAGAGGG CAATGATCTG GTCACGCGCT CGTGGAGCCG CTGCCTGAAC
CAGTACCAGC TCGATCCGGG CCGCCCGCGC GAACCGGTGG TCATTGCATC GTCGGCGCTG
CAGAGCCGGC GCAACCAGCA TGCCGACGTC ATCGAGTGCG CGCGCTACGA GATGACCACG
CTCTACCAGC AGCTCGCGGA TGCCGAATCC GCCGTGGTGC TGACCGATAC CGACGGCGTG
ATCGTGCACA TGGTGTCCTC GCCCGAGTTC GCCGCCGAAG CGGAGCCCAT GGGCCTGCGC
GCCGGTGGCA TGTGGGGCGA GGCCGAGGCC GGCACCAATG GCATGGGCAC CTGCCTGGCC
GCGGCGCATC CGATCTCCGT GCGGCGCGAA GAGCATTTCT TCAGCCACTT CACGCAGCTC
ACGTGCTCGG CGGTGCCGGT GTTCGATCCG TCCGGCGAGA TCATCGCGGT GCTCGACGTG
ACCAGCCGAT CCAGCCTCAT GCAGCAGCAC GTGCTGGTGC TGCTGGGCAT GACGGCGCGC
ATGATCGAGA ACCGGCTCAT CGACAAGCGC TTCTCGAATG CGCATCCGCT GCACTTCCAC
AGCCGGCCCG AATTCGTCTA CACGCTGCAT GAAGGCAAGC TCGCGGTCGG CGACGACGGG
CGCATTCTTG CGGCCAACCG CAGCGCCTTG TTCCAGCTCG GCCTGCAGTC GATGGACGAG
ATCCGCACGC AGCGCATCGA CGATCTGTTC CAGACCTCGC TCGAGGACAT CGTCCAGCGC
AGTCTTTCTT CTTCATTCCA TCCGGTGGTG GCCTACCGGG CCAATGCGGC GCTGCGCTTC
TTCGCGGTGG CGCGGCGGCC GGCCTCCGAT GCCGCCACGC CGGCGCGTGC ACGCGTGGCC
GGCGCGGCAG TCACGGCTCC GATGGTGGCG GAGACGGGCG CCGAAACCTT CCGTGCGCCA
CTGCGGCCCG CAGCTGCGCG TGCGCCGAGC GTTCGCACCT TCAAGGACGC GCGGCTCGTC
GCACACCTGG ACACCGCGCG GCGCGTGGTC GCGCGCCGGA CCCCGGTGCT GCTGTGCGGC
GAAACCGGTT CGGGCAAGGA AGTGTTCGCA CGCGCCATCC ACGAGAGCAG CCCGCATGCC
GAGGGCGCCT TCGTCGCGGT CAATTGCGCG AGCCTGCCCG AGACGCTGAT CGAATCCGAA
CTCTTCGGCT ACAAGGCCGG CGCCTTCACC GGTGCACAGC GCAGCGGGCG GCGCGGCAAG
ATCCTGCAGG CCGATGGCGG CACCTTGTTC CTCGACGAGA TCGCCGACAT GCCGCTGGAG
CTGCAGGCCC GGCTGCTGCG CGTGCTCGAC GAGCGCCAGG TCACGCCGCT GGGCACCGAG
GACACCCATC CGGTGGACTT CCAGCTCGTG AGCGCGAGCC ACCAGCACCT GCCGAGCCTG
GTGCGCGAAG GCCGCTTCCG CGAAGACCTC TACTACCGCC TGGCCGGCAT CGAACTCGAC
CTGCCCGCGC TGCGCGACCG CAGCGACAAG CGCGATCTGA TCCACGACGT GCTCAAGGAC
GAAGGCGGCA GCGACAGCCG GCTCGGCGAA GAGGCCGAGC GCCTGCTCAT GGCCTATTCA
TGGCCCGGCA ACCTGCGGCA GCTGCGCCAC GTGCTGCGCA GCGCCGCCGC GCTGGCCGAC
GGCAAGACCA TCACGCGGGA GCACCTGCCT TCGCTGGCCG TGCGCACGGC ACCTTCGCCA
TTGCCCGCGC TGGCCCGTGC GGCAGTGTCC GAACCGTCCG ATGCCGCCGC GGAAGCGGCG
CCGTCCGATG CGGCACCCGC CATCAAGCAA CTCAACCCGA TCCAGGCCAA CGAGCGGCAA
GTGCTGCTGC AGATGCTCGA GCAGCATCGC TGGAACGTGA GCAACGTCGC CAAGGCGCTC
GATGTCAGCC GCAACACCCT GTACCGAAAA CTCCACAAGC TTCACATCGA GATCTCTCCA
CCCGATTGA
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| Protein sequence | MTLTLRQGDR HADRVLDVVR RGFHEEGNDL VTRSWSRCLN QYQLDPGRPR EPVVIASSAL
QSRRNQHADV IECARYEMTT LYQQLADAES AVVLTDTDGV IVHMVSSPEF AAEAEPMGLR
AGGMWGEAEA GTNGMGTCLA AAHPISVRRE EHFFSHFTQL TCSAVPVFDP SGEIIAVLDV
TSRSSLMQQH VLVLLGMTAR MIENRLIDKR FSNAHPLHFH SRPEFVYTLH EGKLAVGDDG
RILAANRSAL FQLGLQSMDE IRTQRIDDLF QTSLEDIVQR SLSSSFHPVV AYRANAALRF
FAVARRPASD AATPARARVA GAAVTAPMVA ETGAETFRAP LRPAAARAPS VRTFKDARLV
AHLDTARRVV ARRTPVLLCG ETGSGKEVFA RAIHESSPHA EGAFVAVNCA SLPETLIESE
LFGYKAGAFT GAQRSGRRGK ILQADGGTLF LDEIADMPLE LQARLLRVLD ERQVTPLGTE
DTHPVDFQLV SASHQHLPSL VREGRFREDL YYRLAGIELD LPALRDRSDK RDLIHDVLKD
EGGSDSRLGE EAERLLMAYS WPGNLRQLRH VLRSAAALAD GKTITREHLP SLAVRTAPSP
LPALARAAVS EPSDAAAEAA PSDAAPAIKQ LNPIQANERQ VLLQMLEQHR WNVSNVAKAL
DVSRNTLYRK LHKLHIEISP PD
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