Gene Vapar_3053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3053 
Symbol 
ID7973773 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3211271 
End bp3212428 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content69% 
IMG OID644793637 
Productpyrroloquinoline quinone biosynthesis protein PqqE 
Protein accessionYP_002944938 
Protein GI239816028 
COG category[R] General function prediction only 
COG ID[COG0535] Predicted Fe-S oxidoreductases 
TIGRFAM ID[TIGR02109] coenzyme PQQ biosynthesis protein E 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCACCG CCGCGCCGCC GCGCCCCGGA CCGCCGCTGT GGCTGCTGGC CGAGCTGACC 
TACCGCTGCC CGCTGCATTG CGTGTTCTGC TTCAACCCGG TCGACTTCGC GCAGCAGGAG
AACGAACTGG GCACCGAGGA CTGGCTGCGC GTGCTGCGCG AAGGCCGCGA GCTCGGCGCG
GTGCAGTGCG GCCTCTCGGG CGGCGAGCCG CTGCTGCGCG ACGACCTCGA GATCATCATT
GCCGAGGCCG CGCGCCTGGG CTACTACACC AACCTGCTGA CCTCGGGCGT GGGCCTCACG
GCGCAGCGCG CCGCCGCGCT CAAGGCCGCG GGCCTGGACC ACGTGCAGCT GTCGTTCCAG
GACTCGACGC GCGAGATGAA CGACTTCCTC TCGCACACCA AGACCTTCGA GCTCAAGAAC
CGGGTGGCGA AGATCATCAA GGACCAGGGC TGGCCGATGG TGCTGAACGT GGTGATCCAC
CGCATGAACA TCGACCACAT CGACCGCATC ATCGAGATGG CGCACGAGAT GGGGGCCGAG
TACCTCGAGC TTGCCAACAC CCAGTACTAT TCCTGGGCCT TCGTCAACCG CGACCAGCTG
CTGCCCACGC ACGAGCAACT GCGCCATGCG GAGGAGGTGA CCGATGCCTG GCGCAAGCGG
CTCGGCGAGC GCATGCGCAT CTTCTTTGTG GCGCCCGACT ACCACGAGGG CAAGGCCAAG
AAATGCGTGA ACGGCTGGGG CAGCATGTTC CTCACCGTGG CGCCCGACGG CACCGCGCTG
CCTTGCCACA CGGCCAAGAT GCTGCCGGGC CTCGAATTCC CGAACGTGAA GGCGCACAGC
CTGCGGGAGA TCTGGTTCGA TTCGGAAGGC TTCAACCGCT ACCGCGGCAC CGGCTGGATG
AAGGAGCCCT GCGCGAGCTG CGACCAGCGC GAGCAGGACC TGGGCGGCTG CCGCTGCCAG
TCCTACCTGC TGGCGCAGGA CGCGGCCGCG GCCGATCCGG TGTGCGCGAA GAGCCCGGAC
CACCACCGCG TGGTCGAGGC GGTGGAGCGT GCGGCCGCGC GCGACCCGGC GGCGCCGACG
GAGCATCCGC TGGTGTTCCG CGATCCCGCC AATTCGCGGC GGCTTTCCTC CGTGGCGCTC
GTCACGCCGG ACGCGTGA
 
Protein sequence
MTTAAPPRPG PPLWLLAELT YRCPLHCVFC FNPVDFAQQE NELGTEDWLR VLREGRELGA 
VQCGLSGGEP LLRDDLEIII AEAARLGYYT NLLTSGVGLT AQRAAALKAA GLDHVQLSFQ
DSTREMNDFL SHTKTFELKN RVAKIIKDQG WPMVLNVVIH RMNIDHIDRI IEMAHEMGAE
YLELANTQYY SWAFVNRDQL LPTHEQLRHA EEVTDAWRKR LGERMRIFFV APDYHEGKAK
KCVNGWGSMF LTVAPDGTAL PCHTAKMLPG LEFPNVKAHS LREIWFDSEG FNRYRGTGWM
KEPCASCDQR EQDLGGCRCQ SYLLAQDAAA ADPVCAKSPD HHRVVEAVER AAARDPAAPT
EHPLVFRDPA NSRRLSSVAL VTPDA