Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3045 |
Symbol | |
ID | 7973765 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3204336 |
End bp | 3205277 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644793629 |
Product | 40-residue YVTN family beta-propeller repeat protein |
Protein accession | YP_002944930 |
Protein GI | 239816020 |
COG category | [S] Function unknown |
COG ID | [COG3391] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR02276] 40-residue YVTN family beta-propeller repeat |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.425912 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGCTGC TGTGCAGCCC GGCCTGGGCC TCGCCGTTCG CCTACATCAC CAACCAGGGC AGCCACGACG TGTCGGTGAT CGACCTCGCC TCGCAGCAGG TGGTGGCCAC GGTGCCCGTG GGCCGCTCGC CGGCCGGCGT GGTGGCGTCC AGCCGCGCGG GCCGGGCCTT CGTCTCCAAC CCCGACAGCA AGACCATCTC GGTCATCGAC ATGCGCCAGC AGAAGGTCGT GAACACGCTG CCGGCCGGCG ACGGGCCGGT GGGCATCGAC ATCTCGGCCG ACGGCCGGCG CCTCTACGTG GCCGACTGGT ACAGCGGCCG GCTGCTGGTG CTCGACGCGC AGGCCGCCGG TGCCGCCAAG CCCCTGGCTT CGATCGCGGT CGGCCGCGCG CCTGCCGGCG TGGCCGCGCA TCCCGGCGGC GCCGCCGTTT TCGTGGCCGA GCGCGACGAC GACAGCGTGG CCGTGGTCGA CACCGCCGCG CAGCGCGTGC TGGCGCGCGT GCGCGTCGGC AGCCATCCCT TCGCGCTGTT CTACGACGCG CCGCGCTCGC GCCTCTACGC GCTCAACGTG CAGAGCAACG ACGTCTCGGT GGTCGACATG CGCGACATCC GCCGCCCGGC CGTGATTGCC ACCGTGAAGG TCGGCAAGGC GCCCTACGGC GCGGCGCTGG CCGAGGGCGG CGCGCTGCTC TACGTGACCA ACCAGCACGA AGACTCGGTC AGCGTGATCG ATGCCGCCTC GCTGAAGCTG CTGCGCACCC TCCCCGGCTT TGCCTACCCC GAAGGCATTG CCGCGCACGG CGACCGGGTC TACGTCGTCA ACTGGATGGA CGACAACGTG CAGGTGCTGG ACGCCGCGAG CGGGCAGAAG CTCAAGACCA TTGCCACGGG ACAGAACAGC CGCGGCTTCG GTGCCTTCAT CGGTGCGCCG ATGGAGCCCT GA
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Protein sequence | MLLLCSPAWA SPFAYITNQG SHDVSVIDLA SQQVVATVPV GRSPAGVVAS SRAGRAFVSN PDSKTISVID MRQQKVVNTL PAGDGPVGID ISADGRRLYV ADWYSGRLLV LDAQAAGAAK PLASIAVGRA PAGVAAHPGG AAVFVAERDD DSVAVVDTAA QRVLARVRVG SHPFALFYDA PRSRLYALNV QSNDVSVVDM RDIRRPAVIA TVKVGKAPYG AALAEGGALL YVTNQHEDSV SVIDAASLKL LRTLPGFAYP EGIAAHGDRV YVVNWMDDNV QVLDAASGQK LKTIATGQNS RGFGAFIGAP MEP
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