Gene Vapar_3040 details

Gene Information

• Locus tag: Vapar_3040
• ID: 7973760
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 3199919
• End bp: 3201745
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 644793624
• Product: PQQ-dependent dehydrogenase, methanol/ethanol family
• Protein accession: YP_002944925
• Protein GI: 239816015
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG4993] Glucose dehydrogenase
• TIGRFAM ID: [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.520136
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGTTTT CCAGGCAGAT CGCCGGCCGT CTCGTACGGC ATATCGGCGT CGCGATGTTG 
GCTCTTCCGG CCTTGGCGCT CGCCAATGCC GACGTCGAGA AAAACATCGC CAACTCCAAG 
AACTGGGCCA CGCAAGCGGG CGATATGTTC AACCAGCGAT ACAGCAAGTT GAATCAGATC 
ACCAAGAGCA ACGTGGGCAA GATGCAGGTC GCGTGGACCT TCTCCACCGG CGTGCTGCGC 
GGCCACGAGG GTTCGCCCCT GGTGGTCGAT GGCGTCATGT ACCTGCACTC GCCGTTCCCG 
AACAAGGTGT TCGCGCTCGA CGTCGAGACC CAGAAGATCC TGTGGAAGTA CGAACCCAAG 
CAGGACCAGT CGGTGATCGC GGTCATGTGC TGCGACACGG TGAACCGCGG GCTTGCCTAT 
GCGGAAGGAA AGGTCTTCCT GCAACAGGCC GACACCACCC TGGTGGCGCT CGACAGCAAG 
ACCGGCAAGG TGGTGTGGAC GGTGAAGAAC GGCGATCCGA AGGTCGGCGC CACCAACACC 
AACGCACCCC ACGTCTTCAA GGACAAGGTC ATCACCGGCA TCAGCGGCGG CGAGTTCGGC 
GTGCGCGGCT TCCTGGCGGC CTACAACATC AAGGACGGCA AACTGGCGTG GAAGGGCTTC 
AGCACCGGCC CCGACGAAGA AATGCTGATG GACCCGGCCA AGACCATGAC CTGGACCGAC 
GGCAAGATGG CGCCCGTGGG CAAGGACTCT TCGCTGAAGA CCTGGAAGGG CGACCAGTGG 
AAGATCGGCG GCGGCACCAC CTGGGGTTGG TACAGCTACG ACAAGGCGAC CAATGCCGTG 
TACTACGGCA CCGGCAACCC GTCGACCTGG AACCCCTCGC AGCGCCCCGG CGACAACAAG 
TGGTCCATGA GCATCTGGTC GCGCGACGTC GACACCGGCA AGGTCAACTG GGTCTACCAG 
ATGACGCCCT ATGACGAGTG GGACTTCGAC GGCATCAACG AAATGATCCT GGCGGACATC 
AACGTCAAGG GCAAGCCGAC CAAGGCGCTG GTGCACTTCG ACCGCAACGG CTTCGCCTAC 
ACGCTGGACC GCGTGACCGG CGCGCTGCTG GTGGCCGAGA AGTACGACCC CAAGGTGAAC 
TGGGCCACGC ACGTCGACAT GAAGACCGGC CGGCCGCAGG TGGTGGCCAA GTACTCCACC 
GCGCAGAACG GCGCCGACGT CAACACCAAG GGCATCTGCC CGGCGGCGCT GGGCAGCAAG 
GACCAGCAAC CGGCTTCCTA CGACCCCAAC ACCAAGCTCT TCTACGTGCC GACGAACCAC 
GTCTGCATGG ACTACGAGCC GTTCAAGGTC GAGTACACGG CAGGCCAGCC GTACGTGGGC 
GCCACGCTGT CGATGTACCC CACGCCGGGC AGCCATGGCG GCATGGGCAA CTTCATCGCC 
TGGGATGCGG GCACCGGCAA GATCGTGCAG ACCAAGGCCG AGAAGTTCTC GGTGTGGAGC 
GGTTCGCTGA ACACCGCGGG CGGGATCTCC TGCTACGGCA CGCTGGAAGG CTACCTGAAG 
TGCGTGGATG CCAAGGACAT CAACAAGGAG CTGTTCAAGT TCAAGACCCC GTCCGGCATC 
ATCGGCAACG TGTTCACCTA TGAGCACAAG GGCAAGCAGT ACGTCGGCGT GTTCTCGGGC 
ATTGGCGGCT GGGCCGGCAT CGGCATGGCT GCGGGCATCG ACCCCGAGAA GAGCACCGAA 
GGCCTCGGCG CCGTCGGCGG CTACAAGGAG CTCGCCCAGT ACACCGAGCT CGGCGGCTCG 
CTGACTGTCT TCGCACTGCC CAACTGA 

 

Protein sequence

MKFSRQIAGR LVRHIGVAML ALPALALANA DVEKNIANSK NWATQAGDMF NQRYSKLNQI 
TKSNVGKMQV AWTFSTGVLR GHEGSPLVVD GVMYLHSPFP NKVFALDVET QKILWKYEPK 
QDQSVIAVMC CDTVNRGLAY AEGKVFLQQA DTTLVALDSK TGKVVWTVKN GDPKVGATNT 
NAPHVFKDKV ITGISGGEFG VRGFLAAYNI KDGKLAWKGF STGPDEEMLM DPAKTMTWTD 
GKMAPVGKDS SLKTWKGDQW KIGGGTTWGW YSYDKATNAV YYGTGNPSTW NPSQRPGDNK 
WSMSIWSRDV DTGKVNWVYQ MTPYDEWDFD GINEMILADI NVKGKPTKAL VHFDRNGFAY 
TLDRVTGALL VAEKYDPKVN WATHVDMKTG RPQVVAKYST AQNGADVNTK GICPAALGSK 
DQQPASYDPN TKLFYVPTNH VCMDYEPFKV EYTAGQPYVG ATLSMYPTPG SHGGMGNFIA 
WDAGTGKIVQ TKAEKFSVWS GSLNTAGGIS CYGTLEGYLK CVDAKDINKE LFKFKTPSGI 
IGNVFTYEHK GKQYVGVFSG IGGWAGIGMA AGIDPEKSTE GLGAVGGYKE LAQYTELGGS 
LTVFALPN